Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1093 ATGGAGAGTGAGTGGAAGACTAATGCTGAGATATCACCAAATTGTCCTAGGTGTGGCTCTTCCAACACCAAGTTTTGCTACTACAATAACTACAGTTTAACACAACCAAGGTACTTTTGCAAAGGCTGCAGAAGATACTGGACCAAAGGAGGATCCCTTCGCAATGTGCCTGTTGGTGGAAGCTGCCGTAAGAAAAGAAGAAGTAATAAGAACTTAAGACAATCCATTGATAGTCTTACTTTCAAAAATTCACCTTGTAATAACCCTAATGAGCATTCTTATGATCCTATAAGGACTTCATGTTCTAGCTCCTCAGTGGTAAGTACTTGTGGACCAAATATTGATCTTGCACTAGTTTATGCAAATTTCCTCAACCAAAAGCCAGATTCAGGAGCTGGGGTTGAGAATCAAGATCAAGTGCATGCAGTTTTTGATCCTTCTAACAAAGTAATTGGACCAAGTCCTATGTTGCCTGAAGAACTTGCTCTTAGTGGATGTTTTAACTTTCCAGGATCCCATTTTTGTGATGGTAATAACCCAATGTACTTTAGAGGGTTCAACTCTATGAAGATTCATCATGAAGCTAGGATTGAGCAATGTAATAATCATCATGAAGGTATCAATTTTGAGTTGCCTCCTTTGCCAGGTGAAGAGGAAGTTTCACATGATATGATGTGGACCAATTCTGAAATGATGGTAAACAATGTCTTTCAAGCCACCCAATCTCCACTTTTTGGACCCAATGCTCATGATGATGCAAACTTGCTAATGGGTAATTGGAGCCCTTTCGATTTGCCAAGGGATTCGTCTTTTCCTAAGCCTAGATAA 828 0.3973 MESEWKTNAEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGSCRKKRRSNKNLRQSIDSLTFKNSPCNNPNEHSYDPIRTSCSSSSVVSTCGPNIDLALVYANFLNQKPDSGAGVENQDQVHAVFDPSNKVIGPSPMLPEELALSGCFNFPGSHFCDGNNPMYFRGFNSMKIHHEARIEQCNNHHEGINFELPPLPGEEEVSHDMMWTNSEMMVNNVFQATQSPLFGPNAHDDANLLMGNWSPFDLPRDSSFPKPR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1093 275 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Lal12g1093 275 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Lal12g1093 275 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 270 IPR045174 GO:0003700|GO:0006355
Lal12g1093 275 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Lal12g1093 275 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1093 Lal-Chr12 10984763 10985590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1093 7 268 C2C2-Dof Transcription Factor Family AT3G52440 42.960 2.96e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal12g1093 zf-Dof 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1093 - - gmx:100787193 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1093 12 10984763 10985590 Lal12g1093 12 10984763 10985590 ECH