Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0679 ATGGATACAACTCAGTGGCCACAAGAGATGATGGTGAAGCCAATAGAAGAGATAGTAATGACAAAGCCTGCAACAGTAGCATCACTGGAGAGGAAGCCAAGGCCACAGAAAGAACAAGCCCTAAACTGTCCAAGGTGTCATTCAACCAACACAAAGTTCTGTTACTACAACAACTACAACCTCACACAACCAAGATATTTCTGCAAGACTTGTAGAAGGTACTGGACTGAAGGTGGGACCCTCAGAAACATTCCTGTAGGAGGTGGATCAAGGAAGAACAAGAGATCATCTTCTACTTCTTGTTCCTCATCTTCCTCTCATAAGAAGGTTTCAGATCTGCTCACACCTCAAAACCCTAAGGTTCATGATGGCCAAGATCTAAACTTGTCTTTCAGAAACATACCTGAATTGGTTCAACAAAGTAACAATGACAGTGTATCTGCCTCAGCTTCTTCTACTATTACTGCTACTACATCTCAGCTTTCAGCATTGGAGCTTCTTACTGGGATCACATCAGGTTCAAGGGGTTTGATGAGTTCTTTTATGCCTATGAATGCTCCTGTTCCACGAGATCCAAATTCAGTTTACAATTGTGGGTTTCCTTTGCAAGATTTTAAGCCAAGTTTGAGTTTCTCTTTGGATGGGATTGGAAACCTTCATGGTAGTAGTGTTCAAGAGACAAGTGGGAGGCTTTTGTTTCCATTTGAGGATTTGAAACATGTTGCTAGCACCAACACTACAATAATGGATCACAATAATAATGGTAAGGATCAACATGGGTATTCAAATGGTGGGTATTGGACTGGTATGTTAGGACGAGGGTCATGGTAA 831 0.4164 MDTTQWPQEMMVKPIEEIVMTKPATVASLERKPRPQKEQALNCPRCHSTNTKFCYYNNYNLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSSTSCSSSSSHKKVSDLLTPQNPKVHDGQDLNLSFRNIPELVQQSNNDSVSASASSTITATTSQLSALELLTGITSGSRGLMSSFMPMNAPVPRDPNSVYNCGFPLQDFKPSLSFSLDGIGNLHGSSVQETSGRLLFPFEDLKHVASTNTTIMDHNNNGKDQHGYSNGGYWTGMLGRGSW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0679 276 MobiDBLite consensus disorder prediction 82 126 - -
Lal12g0679 276 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Lal12g0679 276 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 109 - -
Lal12g0679 276 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 136 273 - -
Lal12g0679 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 109 IPR045174 GO:0003700|GO:0006355
Lal12g0679 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 136 273 IPR045174 GO:0003700|GO:0006355
Lal12g0679 276 MobiDBLite consensus disorder prediction 90 113 - -
Lal12g0679 276 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Lal12g0679 276 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0679 Lal-Chr12 4990353 4992343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0679 1 276 C2C2-Dof Transcription Factor Family AT4G24060 41.908 6.38e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal12g0679 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0679 - - cit:102618039 316.235