Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0411 ATGGCTCTTTTCCAAACTCTACGTTTCCCTCTCACCCTTTTGCTTTCTCTCTTCTTTTTATCTCTAGCTTTTGCTCTCGACATGTCCATCATTGACTACGATGCAAGGCTCACAGATACTCACCTTATGAACATGTACGAGGCGTGGCTTTTGAAGCATGGCAAGTTCTATAATGCCTTGGGTGAGAAAGAACGTAGGTTTGAGATTTTTAAGGATAATGTTCGGTTCGTTGACCAGCATAACATGGCCACGAACCCAACGTATAAGTTGGGGTTGAATAAGTTTGCTGATCTCACCAATGAGGAGTATAGGAACATGTATTTAGGTACACGAAAGCGTTCATCAGAAGGGTTGTTGTCTGGGACGAAGAAGAGTGGTCGCTATGCTTTTAAGGATGGTGAGGAGTTACCTCATTCTGTGGATTGGAGGAAGAAAGGTGCAGTTTCTCCTGTTAAAGATCAAGGCCAATGTGGGAGTTGCTGGGCATTCTCCACGGTTGCTGCTGTGGAAGGTATCAATCAAATTGTAACCGGCAACATGATCACCCTATCAGAACAAGAGTTGGTAGATTGTGACAAAACCTATAACATGGGATGCAATGGAGGTCTCATGGACTATGCATTTGAGTTTATTATCAAGAATGGTGGCATTGATACCGAAGATGATTACCCATACCATGCTCGTGATCGTTCATGTGATCCTAACCGGAGAAATGCCCGGGTAGTTAGCATTGATGGATATGAAGATGTTCCACAAAATGATGAACAATCCTTGAAGAAGGCTGTTTCATACCAACCAGTTAGTGTTGCCATTGAAGCTGGTGGCAGGGCATTTCAACTTTATCAATCGGGTGTTTTTACTGGCATATGTGGCACAGAACTAGACCATGGTGTTGCAGTAGTTGGATATGGAACTGAGGATGGTAAGGATTACTGGTTAGTGAGGAATTCTTGGGGACCAGAATGGGGTGAGAATGGTTACATCAAGCTAGAGCGTAATATAAACACAACCGAGGGTAAGTGTGGTATTGCAATGGAGGCATCCTACCCTACAAAGAATGGTGTGAACCCTCCAAAGCCTGCTCCTTCTCCTCCAACTCCTGTTGCTCCTTCTTCAAATGTGTGTGATGAATACTACTCTTGCTCCGCCGGAACCACTTGCTGCTGCATGTTTCAGTATGAAAGCTTCTGCTTCGGATGGGGATGCTGTCCTGTTGAGTCTGCAACTTGCTGTGATGACCGCTCTAGCTGCTGTCCTCCTGAATACCCTGTCTGTGATGTTAATGGTGGAACTTGCCTCTTGAGCAAAGAAAACCCATTTGGAATCAAAGCTTTGAGAAGAACACCTGCTACAAGTACTTGGACCCAAAGGAAAGCTGCCATGAAAACCAAGTTTGCATGA 1401 0.4461 MALFQTLRFPLTLLLSLFFLSLAFALDMSIIDYDARLTDTHLMNMYEAWLLKHGKFYNALGEKERRFEIFKDNVRFVDQHNMATNPTYKLGLNKFADLTNEEYRNMYLGTRKRSSEGLLSGTKKSGRYAFKDGEELPHSVDWRKKGAVSPVKDQGQCGSCWAFSTVAAVEGINQIVTGNMITLSEQELVDCDKTYNMGCNGGLMDYAFEFIIKNGGIDTEDDYPYHARDRSCDPNRRNARVVSIDGYEDVPQNDEQSLKKAVSYQPVSVAIEAGGRAFQLYQSGVFTGICGTELDHGVAVVGYGTEDGKDYWLVRNSWGPEWGENGYIKLERNINTTEGKCGIAMEASYPTKNGVNPPKPAPSPPTPVAPSSNVCDEYYSCSAGTTCCCMFQYESFCFGWGCCPVESATCCDDRSSCCPPEYPVCDVNGGTCLLSKENPFGIKALRRTPATSTWTQRKAAMKTKFA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0411 466 Pfam Cathepsin propeptide inhibitor domain (I29) 46 103 IPR013201 -
Lal12g0411 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 311 330 IPR025661 -
Lal12g0411 466 Gene3D Cysteine proteinases 29 353 - -
Lal12g0411 466 Pfam Papain family cysteine protease 136 351 IPR000668 GO:0006508|GO:0008234
Lal12g0411 466 PRINTS Papain cysteine protease (C1) family signature 154 169 IPR000668 GO:0006508|GO:0008234
Lal12g0411 466 PRINTS Papain cysteine protease (C1) family signature 296 306 IPR000668 GO:0006508|GO:0008234
Lal12g0411 466 PRINTS Papain cysteine protease (C1) family signature 311 317 IPR000668 GO:0006508|GO:0008234
Lal12g0411 466 SUPERFAMILY Granulin repeat 373 406 - -
Lal12g0411 466 SMART Inhibitor_I29_2 46 103 IPR013201 -
Lal12g0411 466 SMART pept_c1 136 351 IPR000668 GO:0006508|GO:0008234
Lal12g0411 466 CDD Peptidase_C1A 137 350 IPR039417 -
Lal12g0411 466 PANTHER CYSTEINE PROTEASE 33 380 - -
Lal12g0411 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 294 304 IPR025660 -
Lal12g0411 466 Pfam Granulin 386 433 IPR000118 -
Lal12g0411 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 154 165 IPR000169 -
Lal12g0411 466 Gene3D Granulin 371 434 IPR037277 -
Lal12g0411 466 SMART GRAN_2 375 432 IPR000118 -
Lal12g0411 466 SUPERFAMILY Cysteine proteinases 39 351 IPR038765 -
Lal12g0411 466 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0411 Lal-Chr12 2915140 2918372 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0411 12 2915140 2918372 Lal12g0411 12 2915140 2918372 ECH
Lal8g0649 8 4584723 4588983 Lal12g0411 12 2915140 2918372 ECH
Lal10g0829 10 15922210 15926620 Lal12g0411 12 2915140 2918372 ECH
Lal25g0597 25 4510527 4515859 Lal12g0411 12 2915140 2918372 ECH