Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1539 ATGCAGAAACATCAATACAATACCACGGAACCTAGGAACGATGAATTCCTTCCTGCATCACAGTCGATCCGCCAAGACCATTTGGATGGTGTGCATATCAATACACGACTTGCAGCCTTCAACATGCCCGAAAATAAACCTGTACTGAATTATTCCATACAGACTGGTGAGGAGTTTTCTCTTGAATTTATGAGAGACAGGGTTAACATGAGGAATCCCATCTTTCCAAATGTTGTCGGTAATCCCAGTTATGCAACAGGGTATATGGAATTGAAAGGCATTTTAGGCCATACAGGATCTGATAATGGGTCTGATATTTCTATACTCACAAAAGTAGAAAAAGGTCCAAAAGACAGAAATAGTTATAAATCAGCTCAATCAATTCCTAGAACTTCATCCAATCAAGACAATAACCGAGTCCTTCAGGGTATTGCCTCTTCTGGATCTTCGGACAGCTCATCGATGAAGGTTCTATGCAGCTTTGGTGGTAGAATATTACCACGGCCAGGTGATGGTAAGCTTAGATATGTTGGGGGCGAAACGCGTATTATTAGCATAAGAAAGGACATTCATTGGCAGGAGCTTATGCATAAAATGTTATCAATCTATAATGAAGTTCATGCAATGAAGTATCAGCTACCTGGTGAAGATCTTGATGCCTTAGTTTCAGTATCTTCTGATGAGGATCTACGGAATATGATGGAAGAATGTCATGAGCTACAAAGCAGAAGAAGGTCACTAAAGCTTAGGATGTTTCTATTCTCTATAAATGATTTGAATGACACTCAGTTTGGTATAGGTAGCGTTGGTGGTGATTCTGAAATGGAGTATGTAGTTGCTGTTAATGGCATGGACTTAGGATCAAGAAACAACTCAATTCTCCTTGGAGCAAGCAGTTCTACCAATCATCTACATGAACTGGATGGACAAAATATTGAGAGAGGGGCCAACAGAGTTCCTGAAGAATCATTTGGTGTCAGTAGCTCTTCCTTGACTGGCAATGTTAACTCATCTTTGACAATTCAATCGTCGGAACCGATGGTACAAACATCCTCAAATGCTTATGAAAGTTATCCATTGTTTTACAATGACCAGATCATTCACCATGGGGAAACTAGTCAATATCCACCACGCAACTGCCTTGAACTTTCCAACAACGCTCCTCGCAGTCTCGGAGAGATTCCAGTTTCTGTGTCTACCCCTGGTCTTGCTAACCAAGGTACTATGAATGAAGGGCAAAATTCAGATTTTCCAACAATTCAGGTGAAAAGAAAGGGTGATAGTTTCATTCTTAAAGGCAACGAGGGCAATATGCAAGGTAATGTTTCAGAGGGGTCAGTTACAATTGCATTATCAGAAGGGAATCATCCTACACTGCCATCACCAAATAAAGGTAAACACAAGCAGTTTGAAGATGCTTCTTCATTGGTTAGTACTACAAATCCCACACAGACTCCTAAATCTGGTGAAGATGATACTGTATCTACTGATGCATTTCAGGATGCTCAGGTTGATGTTGGGTCCAATTTCATTGATTTCAGTTACCTTGAACCACCTCCACTTCCTAGTAGAGTCTATTATTCTGAGAGAATTCCCAGGGAGCTGGAAGATTTGCTGAACCGATCTACGAAGTCAGATGATGCATATGGTTCTCATTTACTCATATCAGATTTACTTTCTGACTTCAACCAGAAGAATCCAGTTACAGAATCCAGTGACATATATCATAGTGGGAATCTGTCAAATCTGAATAAAGTGTCCGGCTCGGAATCAAAGACCTTGCATGTAGATGGCCATACCGATGGTGAGTGGTTTTCCCAACTGAATTACAATAAGGTACCTGGTCCTGATGCAGCAGGTCAGGTAAATTCAGAGCAGAAGCAAGTTTTATCAGAGAACAAAGTTTCTAGTAATGAGGATCATGTCCTTAGTTCTGAAGATAACCATAACATTCTCCAAGTTGATGAAACCAAGGGCACTGAACATCCTTCATTTCTCCGGGTCTCCTCTGTTGGACGGAATGAGAAAACAGCATCTAAACTTCCAGACCTTAATATGGGTGAGGTTTCTACCAGGGAATCCAATAATGATAGTAAGGTGCCAGAAAAGCCTCTAGTTTTAACTGGAAACACAAACCAAGATGTTTCTCAAGATTTTCCCCTGGATGCTAAATCCAGAACTGCTGAGGGTGACATTCTGATTGATATCGACGACAGGTTTCCCCGTGATTTCTTTTATGATATGTTCTCGAAGGCAATACTTTCTGAAGATTCACCAAATTTTGGTTCATTATCAGCAGATAGAGTAGGTTTGAGCTTAAACGTGGACAATCATGAGCCTAAACGTTGGTCATTTTTTCAAAAGCTGGCCCAAGAGGGGTTCGATAATGTGTCTCTAATTGATCAGGATAATCCTGGTTTTTCATCTGGCCAAAGAAATACAGAAGAAGGAAATAGTAAGTCTCAGCAATCTTCTCTTCTACCATCAGATGGTGTTTTGGCCGGACACAAGGAATCCTATCTGAATTTTGGTGAAGAAAATCAGAAATACTTACCCGTAACAACTACAAGGGAGATCACTGTTTTTCATCCAAAACATGACCATTCCCAAATTAAGGGCAACGAAAAGACCAACGTTGATGCTACAATTGAAAACATAAGACCACAAGAGTGTGAATATCAGATTCAGGATGCCAAGAATGAAACAAGGAGTGTGGATCTACCCCGACAAGATCCTTCTTTTGGGGATTTTGACATCAGTACTCTGCAGCTCATAAAGAATGATGATCTTGAAGAGCTGCGAGAACTAGGTTCTGGTACCTTTGGGACTGTATATCATGGGAAATGGCGGGGATCAGATGTTGCAATTAAAAGAATAAAGAAAAGCTGCTTCGCTGGTAGATCGTCAGAACAAGAGAGACTGACTGTAGAGTTCTGGCGAGAAGCTGATATACTGTCCAAGCTTCACCATCCAAATGTAGTGGCTTTTTATGGCGTCGTTCAGGATGGACCTGGAGCCACATTAGCAACTGTTACAGAGTTCATGGTGGATGGTTCTCTTAGGCATGTTTTGCTTCGGAAGGATAGGCCTCTTGATCGTCGCAAGAGACTAATAATTGCCATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAACATTGTGCATTTCGACTTGAAATGTGACAATCTGCTTGTGAACTTGAAGGATCCTTTACGGCCAATATGCAAGGTTGGCGATTTTGGCCTTTCAAAAATTAAGAGAAATACCCTCGTTTCTGGTGGTGTGCGCGGGACTCTACCTTGGATGGCACCCGAGCTACTGAATGGTAGCAGCAATAGGGTTTCGGAAAAGGTTGATGTGTTCTCTTTTGGCATTGTGTTATGGGAGATTCTTACTGGTGAGGAGCCATATGCAAATATGCACTATGGTGCAATCATAGGAGGTATTGTAAATAACACACTAAGACCTACAATCCCCGGTTATTGCGATATCGAATGGAGAACACTAATGGAACAATGCTGGGCACCTAATCCTTCAGTCAGGCCATCCTTCACAGAAATTGCTCGCCGCTTGCGTGTGATGTCGGCATCTGCTAGTCAGACCAAGGGACATGGCCACAAAGCATCTAAATGA 3639 0.4152 MQKHQYNTTEPRNDEFLPASQSIRQDHLDGVHINTRLAAFNMPENKPVLNYSIQTGEEFSLEFMRDRVNMRNPIFPNVVGNPSYATGYMELKGILGHTGSDNGSDISILTKVEKGPKDRNSYKSAQSIPRTSSNQDNNRVLQGIASSGSSDSSSMKVLCSFGGRILPRPGDGKLRYVGGETRIISIRKDIHWQELMHKMLSIYNEVHAMKYQLPGEDLDALVSVSSDEDLRNMMEECHELQSRRRSLKLRMFLFSINDLNDTQFGIGSVGGDSEMEYVVAVNGMDLGSRNNSILLGASSSTNHLHELDGQNIERGANRVPEESFGVSSSSLTGNVNSSLTIQSSEPMVQTSSNAYESYPLFYNDQIIHHGETSQYPPRNCLELSNNAPRSLGEIPVSVSTPGLANQGTMNEGQNSDFPTIQVKRKGDSFILKGNEGNMQGNVSEGSVTIALSEGNHPTLPSPNKGKHKQFEDASSLVSTTNPTQTPKSGEDDTVSTDAFQDAQVDVGSNFIDFSYLEPPPLPSRVYYSERIPRELEDLLNRSTKSDDAYGSHLLISDLLSDFNQKNPVTESSDIYHSGNLSNLNKVSGSESKTLHVDGHTDGEWFSQLNYNKVPGPDAAGQVNSEQKQVLSENKVSSNEDHVLSSEDNHNILQVDETKGTEHPSFLRVSSVGRNEKTASKLPDLNMGEVSTRESNNDSKVPEKPLVLTGNTNQDVSQDFPLDAKSRTAEGDILIDIDDRFPRDFFYDMFSKAILSEDSPNFGSLSADRVGLSLNVDNHEPKRWSFFQKLAQEGFDNVSLIDQDNPGFSSGQRNTEEGNSKSQQSSLLPSDGVLAGHKESYLNFGEENQKYLPVTTTREITVFHPKHDHSQIKGNEKTNVDATIENIRPQECEYQIQDAKNETRSVDLPRQDPSFGDFDISTLQLIKNDDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEFMVDGSLRHVLLRKDRPLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNRVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPGYCDIEWRTLMEQCWAPNPSVRPSFTEIARRLRVMSASASQTKGHGHKASK 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1539 1212 PANTHER SERINE-THREONINE PROTEIN KINASE 99 1212 - -
Lal11g1539 1212 ProSitePatterns Protein kinases ATP-binding region signature. 936 961 IPR017441 GO:0005524
Lal11g1539 1212 CDD STKc_MAP3K-like 936 1193 - -
Lal11g1539 1212 Coils Coil 230 250 - -
Lal11g1539 1212 MobiDBLite consensus disorder prediction 630 717 - -
Lal11g1539 1212 PRINTS Tyrosine kinase catalytic domain signature 1012 1025 IPR001245 GO:0004672|GO:0006468
Lal11g1539 1212 PRINTS Tyrosine kinase catalytic domain signature 1049 1067 IPR001245 GO:0004672|GO:0006468
Lal11g1539 1212 PRINTS Tyrosine kinase catalytic domain signature 1120 1142 IPR001245 GO:0004672|GO:0006468
Lal11g1539 1212 PRINTS Tyrosine kinase catalytic domain signature 1164 1186 IPR001245 GO:0004672|GO:0006468
Lal11g1539 1212 MobiDBLite consensus disorder prediction 799 829 - -
Lal11g1539 1212 SUPERFAMILY Protein kinase-like (PK-like) 921 1192 IPR011009 -
Lal11g1539 1212 MobiDBLite consensus disorder prediction 453 494 - -
Lal11g1539 1212 MobiDBLite consensus disorder prediction 111 153 - -
Lal11g1539 1212 ProSiteProfiles Protein kinase domain profile. 930 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1539 1212 MobiDBLite consensus disorder prediction 639 662 - -
Lal11g1539 1212 MobiDBLite consensus disorder prediction 121 153 - -
Lal11g1539 1212 SUPERFAMILY CAD & PB1 domains 171 261 - -
Lal11g1539 1212 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 99 1212 - -
Lal11g1539 1212 Gene3D - 173 254 - -
Lal11g1539 1212 SMART PB1_new 169 254 IPR000270 GO:0005515
Lal11g1539 1212 CDD PB1_UP2 158 254 - -
Lal11g1539 1212 Pfam Protein tyrosine and serine/threonine kinase 931 1193 IPR001245 GO:0004672|GO:0006468
Lal11g1539 1212 MobiDBLite consensus disorder prediction 472 494 - -
Lal11g1539 1212 Gene3D Transferase(Phosphotransferase) domain 1 1018 1211 - -
Lal11g1539 1212 SMART serkin_6 930 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1539 1212 Pfam PB1 domain 171 254 IPR000270 GO:0005515
Lal11g1539 1212 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1055 1067 IPR008271 GO:0004672|GO:0006468
Lal11g1539 1212 Gene3D Phosphorylase Kinase; domain 1 923 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1539 Lal-Chr11 18525254 18531906 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lal11g1539 PK_Tyr_Ser-Thr 3e-61 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1539 11 18525254 18531906 Lal11g1539 11 18525254 18531906 ECH