Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0197 ATGTCTCCATCTAGAAACAACTGGAAAGAAACTCATTACATAGATGATGATCAGAAGGGCTCGATGGAAAAGCAAAGTGATCAAAAGCAACAACAAGTAGCACTCACGTGCCCTCGTTGTGACTCATCAGACACAAAGTTTTGCTACTACAACAACTACAGCTTTTCTCAGCCAAGACATTTCTGCAAAGCTTGCAAGAGATATTGGACAAGAGGTGGAACCATAAGGAATGTCCCTGTTGGTGGTGGTTTTAGAAAAAACAAGCGTGTAAAAAGACCAACAACTACCTCTTCATCCATTGATTCTACTTCTTCTCCTTCAGCTCCTAGTGCTAACTCAAACCCTTCTTCACAACAACCACAGGTCCATATTGGTTCAACTTGTAATCATATCAACCCTTTGTTTTATGGTTTACCTAGTAATTCTTCTGATCTGAATCTTCAATTTTCAAGGGTCAGTTCATCAAGAATCTCAAGTACTGGGTATGATCTTCACTACCCTCATCTTAATGCCCTCAGATTAGGTCTTATGTCAAGTGAAGAAGATAGTGATAATGGTTATTATACAAATAGTACCTTTCCGTCTGGTTATAGTAATAACTCCATGATCTTTAGTCTTACTTCAACTTCTTCTACGCTGCAACAAAAAATCATGAATGACACTGATGGTGGTGTGATCAAAGAAGCTGGTCCATGTACCAATACTACTTTTAAGGGCTTAGCTGCCCCACCAATAGGGCATATGCAAATGGAAAGTAGGGTTGGAAGTGAGAGAGATATGGTGGCTTTAAAAGATGTGAAAGTGGAAGGACTAAAGAACAGGTTGGATGAGTGGAATGGTGCTTACCAAAACCAGATGGAGCATGTGAGATTGTCTGATCCATCACTTTATTGGAATACATCAACAACTATAGTTGCAGCTTGGAATGATCAACCTAATGATATTGGACCATCAATCACTTCTTTGATCTAG 972 0.394 MSPSRNNWKETHYIDDDQKGSMEKQSDQKQQQVALTCPRCDSSDTKFCYYNNYSFSQPRHFCKACKRYWTRGGTIRNVPVGGGFRKNKRVKRPTTTSSSIDSTSSPSAPSANSNPSSQQPQVHIGSTCNHINPLFYGLPSNSSDLNLQFSRVSSSRISSTGYDLHYPHLNALRLGLMSSEEDSDNGYYTNSTFPSGYSNNSMIFSLTSTSSTLQQKIMNDTDGGVIKEAGPCTNTTFKGLAAPPIGHMQMESRVGSERDMVALKDVKVEGLKNRLDEWNGAYQNQMEHVRLSDPSLYWNTSTTIVAAWNDQPNDIGPSITSLI 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0197 323 MobiDBLite consensus disorder prediction 93 123 - -
Lal11g0197 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 203 307 - -
Lal11g0197 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 18 186 - -
Lal11g0197 323 MobiDBLite consensus disorder prediction 1 30 - -
Lal11g0197 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 203 307 IPR045174 GO:0003700|GO:0006355
Lal11g0197 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 186 IPR045174 GO:0003700|GO:0006355
Lal11g0197 323 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Lal11g0197 323 MobiDBLite consensus disorder prediction 9 24 - -
Lal11g0197 323 MobiDBLite consensus disorder prediction 79 123 - -
Lal11g0197 323 Pfam Dof domain, zinc finger 34 89 IPR003851 GO:0003677|GO:0006355
Lal11g0197 323 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0197 Lal-Chr11 1396375 1397686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0197 35 323 C2C2-Dof Transcription Factor Family AT1G28310 38.535 1.43e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal11g0197 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0197 - - gmx:778098 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0197 11 1396375 1397686 Lal11g0197 11 1396375 1397686 ECH
Lal15g0633 15 4360815 4361714 Lal11g0197 11 1396375 1397686 PCT
Lal23g0939 23 11500999 11503102 Lal11g0197 11 1396375 1397686 PCT
Lal11g0197 11 1396375 1397686 Lal15g0633 15 4360815 4361714 PCT
Lal11g0197 11 1396375 1397686 Lal23g0939 23 11500999 11503102 PCT