Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g0196 ATGAATCAACACCAAATTAGTGTTGACCAGAAACTAAATGAGACACAACAATGTGATCGAGGTCAACAGTCCAAGGTTGTGCTTCAACGGCCACAACAACCAGTGCAATGTCCTCGTTGTAATTCTATGAACACCAAGTTCTGCTATTACAACAACTATAATCTGGCACAACCTCGTCACTATTGCAAAACTTGCAGAAGGTATTGGACTCAAGGTGGAACTTTGAGGAACATACCCATTGGAGGTCGTTGTCATAAGAGGAAATATGCTGAAAATTCTACATCTTCTCGATCACAAAAGCCACTTCTATCACCACAAAATGTACTTGTTCAAACCCATCAACCAAACTTGACAACAATGATGAAAGCTAGAGACCCTTTTCTTCTAATGGATCCTTCCACTCGTCCCTTATATCAAGGTAGTGGTGGTGGGTACTTGTCTTCTTTACCCACAATTTATTCAATGAATCAATCACATTCAACTTCTTATGATCAACCTTTCAAAGTTAAAGGTAATAATATAGGTGGTTCTACTTCAAATTTTGGCATGGAATCAGGTTTCAATGTTGGTTCTCTTTCTTCCCAACGCCATATATACCATACGGGTGGCATAGAAAGAGAGAGATATATGGCACAACAAGGTTTAACTATTCCATCAAGCATGTCCACTATCCATAACAATGTCCCTTCTCACACTGATTGGCCTTGGAGCATCATCAATAATGATAATAATAGGAATTGTGATACCTCTTTATGGAGTAACACTTCTATTAATAATGGTAACATTGATACCAATGCTAACGTTGTTGGTTCTACTTCTCTGATGCATAACCAATGGTCCAATTTTCCAGGGTATGGCCCTCCATCGTCATCTTATTGA 879 0.3879 MNQHQISVDQKLNETQQCDRGQQSKVVLQRPQQPVQCPRCNSMNTKFCYYNNYNLAQPRHYCKTCRRYWTQGGTLRNIPIGGRCHKRKYAENSTSSRSQKPLLSPQNVLVQTHQPNLTTMMKARDPFLLMDPSTRPLYQGSGGGYLSSLPTIYSMNQSHSTSYDQPFKVKGNNIGGSTSNFGMESGFNVGSLSSQRHIYHTGGIERERYMAQQGLTIPSSMSTIHNNVPSHTDWPWSIINNDNNRNCDTSLWSNTSINNGNIDTNANVVGSTSLMHNQWSNFPGYGPPSSSY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g0196 292 Pfam Dof domain, zinc finger 33 88 IPR003851 GO:0003677|GO:0006355
Lal11g0196 292 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Lal11g0196 292 MobiDBLite consensus disorder prediction 1 25 - -
Lal11g0196 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 288 IPR045174 GO:0003700|GO:0006355
Lal11g0196 292 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 9 288 - -
Lal11g0196 292 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g0196 Lal-Chr11 1390331 1391209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g0196 30 107 C2C2-Dof Transcription Factor Family AT3G61850 62.821 2.38e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal11g0196 zf-Dof 3.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g0196 - - lang:109329186 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g0196 11 1390331 1391209 Lal11g0196 11 1390331 1391209 ECH
Lal5g1724 5 19357738 19358694 Lal11g0196 11 1390331 1391209 LSH
Lal16g0680 16 4396717 4397679 Lal11g0196 11 1390331 1391209 PCT
Lal23g0940 23 11508257 11509069 Lal11g0196 11 1390331 1391209 PCT
Lal11g0196 11 1390331 1391209 Lal16g0680 16 4396717 4397679 PCT
Lal11g0196 11 1390331 1391209 Lal23g0940 23 11508257 11509069 PCT