Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1261 ATGGTTTTCTCTTCCATTCCACTCTATTTAGATCCCTCCAATTGGCACCAGCAACCAAATCAGCATCAAGCAAATGCCACTAATAGACCTCATGAGCTGCTTCAACCATTACCATCACCGTCTAGTTGTGGTGGAGATGGTGGAGGCTCAGGTAGGCTTGTTCCGGTGGCAGATCAATCTCCTCAATTAGCTAAAATGTTGCCACCAGATCAGACCCCTCAAAAGTGTCCACGGTGCGAATCTACCAACACAAAGTTTTGCTACTACAACAACTACAACCTATCTCAACCAAGGCACTTTTGCAAGACATGCAGGCGTTATTGGACAAGAGGTGGTGCTCTTAGAAACGTTCCCGTTGGTGGGGGATGTAGAAGAAACAAGAAGAACAAAAGGAGTAGTCGCTCCAAATCTCCATCATGTACTGATAATTATAAACCAACACTTTCCAATTCCAGTAGTTCAAACCCTTCAAGTATAGTAACCCCGAACCTAATTGATCGATTCCCACAACTAAATAACCCAACTTTCATGGCTTCCCTTCAGAATATGAACCGTTATGGTATGGGAAACATAAGCAGCACCAATTATATGGGGCTTCAAATTGGCGGTCATGGTTTAACTTCAGTAGGAGGAGTCTTGCAACAGTTACCTTTCTTGAATGGTTTTGAGTCAACTTCAGTAGTTTCATATCCTTTTCAAAGTGAGAGCGTTGAAGCAGCACCATATGGTTTGGTTAAATTTGAAGGTCTAAATTCTTCAAGAAACCCTCTGAGTGTCTCAGAAAATAATAACGAATATTATTCATGGACTGATTTATCACGTCTTGCCTCTTCTTCCACTAGTCATCTGTAA 852 0.419 MVFSSIPLYLDPSNWHQQPNQHQANATNRPHELLQPLPSPSSCGGDGGGSGRLVPVADQSPQLAKMLPPDQTPQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSSRSKSPSCTDNYKPTLSNSSSSNPSSIVTPNLIDRFPQLNNPTFMASLQNMNRYGMGNISSTNYMGLQIGGHGLTSVGGVLQQLPFLNGFESTSVVSYPFQSESVEAAPYGLVKFEGLNSSRNPLSVSENNNEYYSWTDLSRLASSSTSHL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1261 283 Pfam Dof domain, zinc finger 73 128 IPR003851 GO:0003677|GO:0006355
Lal10g1261 283 MobiDBLite consensus disorder prediction 118 161 - -
Lal10g1261 283 MobiDBLite consensus disorder prediction 136 161 - -
Lal10g1261 283 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 280 - -
Lal10g1261 283 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 280 IPR045174 GO:0003700|GO:0006355
Lal10g1261 283 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Lal10g1261 283 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1261 Lal-Chr10 18816409 18818922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1261 18 283 C2C2-Dof Transcription Factor Family AT3G55370 38.339 2.58e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal10g1261 zf-Dof 6.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1261 - - gmx:100775899 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1261 10 18816409 18818922 Lal10g1261 10 18816409 18818922 ECH
Lal25g0148 25 937322 938967 Lal10g1261 10 18816409 18818922 LSH
Lal10g1261 10 18816409 18818922 Lal2g0234 2 1368235 1369921 PCT
Lal10g1261 10 18816409 18818922 Lal9g0229 9 1401218 1404437 PCT
Lal2g0234 2 1368235 1369921 Lal10g1261 10 18816409 18818922 PCT
Lal9g0229 9 1401218 1404437 Lal10g1261 10 18816409 18818922 PCT