Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1106 ATGCAAGACCCAACATTATTTCAACCCATGAAACCCCAATTTCCTGAACAAGAACAACTAAAGTGCCCACGTTGTGATTCCACAAACACTAAATTCTGCTACTACAACAACTACAACCTCTCACAGCCACGCCATTTTTGCAAGAGTTGTAGAAGGTATTGGACCAAAGGAGGTTCCTTGAGAAACATCCCTGTTGGTGGTGGAACTAGAAAGAACACAAAACGTCCATCCACCAATTCCAAACGTGCTGCATCATCATCACAATCACCATCACCATCAGTTTCCTCAGTTTCAATTACACCTCAGGTGTCAGCTGCAGCTACAGAAATCGAGCCGAGCCGAAATGATCCAACCCAAGCTTATTCAATTGGTGGGAGTTTCAGTTCACTTCTTGCATCAGCTGACAATTTGGGGAGCCTACTGGAGGGTCTGAATTCAAGTGGATCAAATATGAAAATGGTGCAAATGAATGAATATGGAAGCTCTGGCCCAATGATGAATTTGGATCCGGGTAGGAATAATGCCGGGTCGGGTGTGCAGGGTAGTGGCAATGCTGCAGAGAGCTTTATGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTAGCAGCAATGGTTGGTCTAACCTTGCAATATACACACCAAGGTCAACTTTTCAGTAG 663 0.4434 MQDPTLFQPMKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGSLRNIPVGGGTRKNTKRPSTNSKRAASSSQSPSPSVSSVSITPQVSAAATEIEPSRNDPTQAYSIGGSFSSLLASADNLGSLLEGLNSSGSNMKMVQMNEYGSSGPMMNLDPGRNNAGSGVQGSGNAAESFMSMQNGDSSCWNGSSNGWSNLAIYTPRSTFQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1106 220 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Lal10g1106 220 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 220 - -
Lal10g1106 220 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 220 IPR045174 GO:0003700|GO:0006355
Lal10g1106 220 MobiDBLite consensus disorder prediction 71 119 - -
Lal10g1106 220 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Lal10g1106 220 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Lal10g1106 220 MobiDBLite consensus disorder prediction 61 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1106 Lal-Chr10 17905410 17906072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1106 11 141 C2C2-Dof Transcription Factor Family AT1G51700 56.338 9.86e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal10g1106 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1106 - - adu:107458974 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1106 10 17905410 17906072 Lal10g1106 10 17905410 17906072 ECH