Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0976 ATGGCTGAGTTCACACAAGATTTTCAAAGCTTTATTGATCCAAGCATGGAACTCATAAATCAATTCATAGGGATTAACACACATGTACTAGACAACTCACATGTAAACATGCAGAATTTGATGATGCCTTTCTCTAGTGACAACTTCTTTGCCTCTCAAGAACCTGAATTTCAAGGAAACTTTGAAGAAAATTTTCAAGGCCTTGTTAACAATGCACTACATGTTTCCCTTCCCATTTTTGCAGCAGAAAATGAAGTTCATGGAGGTAAAAAGAGGAATACAATGGATACTACTCATGAGGCCAGTTCAGAAAATTCAACTCCTGCAGGTTCTGACAGTGGAGGAAAGATAAGAAATAATTTTGGAAGAGGTAAGAGAGTAAAAAGCAATGTAACAGAAGAGGAGAAACCAAAGGAAGTGGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGCATAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTAAGGTGCTTACAGAACATTGTCCCAGGATGTTACAAGACTATGGGCATGGCAGTGATGTTGGATGAAATCATAAACTATGTCCAATCCTTGCAGCATCAAGTGGAGTTCCTTTCTTTGAAGCTTACTGCAGCAAGTACCTTTTATGACTTCAATTCAGAGACAGATGCTTTTGAAACCATGCAGAGAGCAAAGGCATCAGAGGCAAAAGAGTTAGGAAATTATGAAAAAGAAGAATATGGAAGAGCCACTTGCTTCCAACAAACATGGTCCCTTTGA 783 0.387 MAEFTQDFQSFIDPSMELINQFIGINTHVLDNSHVNMQNLMMPFSSDNFFASQEPEFQGNFEENFQGLVNNALHVSLPIFAAENEVHGGKKRNTMDTTHEASSENSTPAGSDSGGKIRNNFGRGKRVKSNVTEEEKPKEVVHVRARRGQATDSHSIAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDAFETMQRAKASEAKELGNYEKEEYGRATCFQQTWSL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0976 260 SMART finulus 155 205 IPR011598 GO:0046983
Lal10g0976 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983
Lal10g0976 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 215 IPR036638 GO:0046983
Lal10g0976 260 Gene3D - 146 215 IPR036638 GO:0046983
Lal10g0976 260 MobiDBLite consensus disorder prediction 127 154 - -
Lal10g0976 260 MobiDBLite consensus disorder prediction 99 114 - -
Lal10g0976 260 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Lal10g0976 260 PANTHER TRANSCRIPTION FACTOR BEE 1 2 259 - -
Lal10g0976 260 MobiDBLite consensus disorder prediction 88 154 - -
Lal10g0976 260 CDD bHLH_AtBPE_like 139 224 - -
Lal10g0976 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 259 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0976 Lal-Chr10 17037992 17039843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0976 1 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 49.110 2.06e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal10g0976 HLH 9.8e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1644 6 19205330 19207783 Lal10g0976 10 17037992 17039843 ECH
Lal6g0677 6 4446989 4448438 Lal10g0976 10 17037992 17039843 ECH
Lal18g1019 18 13195530 13197763 Lal10g0976 10 17037992 17039843 ECH
Lal10g0976 10 17037992 17039843 Lal10g0976 10 17037992 17039843 ECH