Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0887 ATGGATCACCCAACACTATTATTTTCATTCTTATTAACACTCCATCTATCAATATCAGGAGTAATATCAACAACATTCACTATAGTTAACAAATGCGAGTACACAGTGTGGCCAGGGATTCTTTCAAACGCAGGAGTTCCACCACTTTCAACCACCGGTTTCGTTCTTCAAACCGGTGAATCAACCACCATAACTGCTCCAACCTCTTGGGGTGGCCGTTTCTGGGGAAGAACCCATTGCTCCCAAGACTCCACCATTGGAAAATTTTCATGCGTCACAGGTGATTGCGGTTCCGGAAAACTCGAGTGCTCCGGCAACGGTGCAACACCTCCGGCAACGTTAGCTGAGTTCACTTTAGACGGTGCTGGTGGCCTCGACTTCTTCGACGTTAGTTTGGTCGACGGTTACAACGTTGCTATGTTGGTGGTCCCAGACGGTGGTTCTTCTGCCGGGAAGTGTAGCAGCACCGGTTGTATTGGGGATTTGAACGGCGCGTGTCCTTCAGAGCTTAAGGTTATGAGCGTGGATGGGGATGAGGGTGTTGTGGCGTGTAAGAGCGCGTGTGAGGCGTTTGGGTCGGAGCAGTATTGTTGTAGTGGCGCGTATGGTACTCCAGATACTTGTAAGCCTTCTTCATACTCGCAGGTGTTCAAGACTGCTTGCCCACGCGCGTATAGCTACGCGTATGATGATAAAACGAGTACATTTACGTGCGAAAATGCGGATTATACTATTACCTTTTGCCCTGTTCCTAATACCAGTCAGAAAGAGTCAGAGGGACAAAACAGAAATAGTTCATCAACCTCAACCTTAGTTGACAACAGCACAATGGAATATGTAGGTGTTGCAGATCAAAGTGAAATATCATGGGCCACGTGTACCCACGTGTTCCAATCTCAATCTATCTCTGCCATTATTATCAGTATCACAATGCTTCTTTTGCAGTTGTGCCACCTTTTCTAA 963 0.4694 MDHPTLLFSFLLTLHLSISGVISTTFTIVNKCEYTVWPGILSNAGVPPLSTTGFVLQTGESTTITAPTSWGGRFWGRTHCSQDSTIGKFSCVTGDCGSGKLECSGNGATPPATLAEFTLDGAGGLDFFDVSLVDGYNVAMLVVPDGGSSAGKCSSTGCIGDLNGACPSELKVMSVDGDEGVVACKSACEAFGSEQYCCSGAYGTPDTCKPSSYSQVFKTACPRAYSYAYDDKTSTFTCENADYTITFCPVPNTSQKESEGQNRNSSSTSTLVDNSTMEYVGVADQSEISWATCTHVFQSQSISAIIISITMLLLQLCHLF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0887 320 ProSiteProfiles Thaumatin family profile. 23 249 IPR001938 -
Lal10g0887 320 CDD TLP-PA 25 248 - -
Lal10g0887 320 Pfam Thaumatin family 30 249 IPR001938 -
Lal10g0887 320 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Lal10g0887 320 PANTHER OS03G0233200 PROTEIN 6 275 IPR001938 -
Lal10g0887 320 PIRSF PR5 2 290 IPR001938 -
Lal10g0887 320 PANTHER BNAA02G17480D PROTEIN 6 275 - -
Lal10g0887 320 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Lal10g0887 320 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Lal10g0887 320 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Lal10g0887 320 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Lal10g0887 320 SMART tha2 26 249 IPR001938 -
Lal10g0887 320 Gene3D Thaumatin 24 249 IPR037176 -
Lal10g0887 320 SUPERFAMILY Osmotin, thaumatin-like protein 24 249 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0887 Lal-Chr10 16373019 16375674 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0887 10 16373019 16375674 Lal1g0147 1 956211 959554 ECH
Lal10g0887 10 16373019 16375674 Lal10g0887 10 16373019 16375674 ECH