Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0886 ATGAGAGAAATTCTCCACGTTCAAGGAGGCCAATGCGGTAACCAAATCGGTTCCAAGTTCTGGGAAGTTATCTGCGACGAACACGGTATAGATTCTACCGGAAAGTACATCGGCGACGGAAGCGGTTCTGATCTCCAACTCGAGCGAATCAATGTTTATTACAACGAAGCTTCTGGCGGAAGGTACGTTCCGAGAGCGGTGCTCATGGATCTCGAACCTGGAACCATGGATAGCATTAGATCCGGACCGTACGGGAAAATTTTCCGACCCGATAACTTCGTGTTTGGACAATCCGGTGCCGGGAATAACTGGGCTAAAGGTCATTACACTGAAGGTGCTGAGTTGATTGATTCTGTTCTCGACGTTGTTCGTAAAGAGGCTGAGAATTGTGACTGTTTGCAAGGTTTTCAAGTTTGCCACTCACTTGGAGGAGGCACTGGTTCTGGCATGGGAACACTCCTGATATCAAAGATCAGGGAGGAATACCCTGACAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCAAAGGTCTCTGACACTGTCGTGGAGCCATACAATGCCACTTTATCCGTTCACCAGCTAGTAGAGAATGCTGATGAATGCATGGTCCTTGACAATGAAGCACTTTATGACATTTGCTTCAGAACTTTAAAACTCAGCACTCCTAGTTGTGAGTACCCTGGTTCCTTCTCCCCAATTGGTGATCTGAACCATCTGATTTCTGCAACTATGAGTGGAGTTACCTGTTGCTTAAGGTTTCCTGGACAATTGAACTCTGACCTCAGGAAGCTGGCTGTCAATCTGATCCCATTCCCACGTCTTCACTTCTTTATGGTGGGGTTTGCACCTCTCACCTCCCATGGATCTCAGCAGTATGTGTCCCTCACTGTCCCGGAATTGACACAACAAATGTGGGATGCCAAGAATATGATGTGTGCTGCTGATCCCCGTCATGGTCGGTACTTGACCGCATCTGCCATGTTCAGAGGAAAAATGAGCACCAAGGAGGTGGATGAACAAATGATCAATGTACAGAACAAGAACTCATCTTACTTTGTTGAGTGGATTCCCAACAATGTGAAATCCAGTGTTTGTGACATTCCACCCAAGAATTTGAAGATGTCAAGTACTTTTATTGGTAACTCCACATCAATTCAGGAGATGTTTAGGAGGGTCAGTGAGCAGTTCACTGCTATGTTCCGGCGCAAAGCTTTCTTGCATTGGTACACCGGCGAAGGAATGGACGAGATGGAGTTTACTGAGGCCGAGAGCAATATGAATGATTTGGTGGCTGAGTACCAGCAATACCAGGATGCAACTGCGGAAGAGGATGAGTATGAAGATGAGGAGGGTGAAGATAATTATGAGGAGCAGTAG 1380 0.4652 MREILHVQGGQCGNQIGSKFWEVICDEHGIDSTGKYIGDGSGSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSCEYPGSFSPIGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSHGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAEEDEYEDEEGEDNYEEQ 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0886 459 Pfam Tubulin C-terminal domain 273 394 IPR018316 -
Lal10g0886 459 Gene3D Helix hairpin bin 386 442 IPR023123 -
Lal10g0886 459 MobiDBLite consensus disorder prediction 438 459 - -
Lal10g0886 459 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 255 IPR036525 -
Lal10g0886 459 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Lal10g0886 459 Gene3D - 275 385 IPR037103 -
Lal10g0886 459 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Tubulin signature 54 73 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Tubulin signature 96 107 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Tubulin signature 109 133 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Tubulin signature 135 153 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Tubulin signature 154 175 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Tubulin signature 179 192 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Tubulin signature 193 213 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Tubulin signature 382 410 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 SMART Tubulin_4 50 256 IPR003008 GO:0005525
Lal10g0886 459 CDD beta_tubulin 2 438 - -
Lal10g0886 459 MobiDBLite consensus disorder prediction 439 459 - -
Lal10g0886 459 SMART Tubulin_C_4 258 395 IPR018316 -
Lal10g0886 459 PANTHER TUBULIN 1 450 IPR000217 GO:0005874|GO:0007017
Lal10g0886 459 Gene3D Tubulin/FtsZ, GTPase domain 1 274 IPR036525 -
Lal10g0886 459 Coils Coil 420 450 - -
Lal10g0886 459 SUPERFAMILY Tubulin C-terminal domain-like 256 441 IPR008280 -
Lal10g0886 459 PRINTS Beta-tubulin signature 44 61 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 91 102 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 111 129 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 242 251 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 257 270 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 277 293 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 323 341 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 341 355 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 359 382 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 389 400 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PRINTS Beta-tubulin signature 424 442 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 Pfam Tubulin/FtsZ family, GTPase domain 3 214 IPR003008 GO:0005525
Lal10g0886 459 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 143 149 IPR017975 GO:0005525|GO:0005874|GO:0007017
Lal10g0886 459 PANTHER TUBULIN BETA-1 CHAIN-RELATED 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0886 Lal-Chr10 16358901 16362207 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0886 10 16358901 16362207 Lal10g0886 10 16358901 16362207 ECH
Lal25g0528 25 3788007 3791138 Lal10g0886 10 16358901 16362207 LSH