Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0879 ATGGGAGTTCCAGCGTTTTATAGATGGCTAGCTGAAAAATATCCAATGGTGATTGTTGATGCAATTGAAGAGGAACCGGTGGTTATCGAAGGAACTCAGATTCCAGTTGATACGAGCAAGGAAAACCCTAACAACATTGAATATGATAACCTCTACCTCGACATGAATGGAATCATTCACCCTTGCTTTCACCCCGAAGATAGGCCATCTCCGACGTCGTTTGATGAGGTTTTTGAGTGCATGTTTGACTACATTGACAGACTATTTTGTATGGTGCGGCCTAGGAAGCTCCTCTATATGGCTATTGATGGTGTTGCACCAAGGGCTAAAATGAATCAACAGCGTTCTAGGCGGTTTAGAGCAGCAAAAGATGCATCTGATGCCGCTGCAGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAGGGAGGGCAGAAGACTTCCTCTCAAAGAAGAGTCACAGACTTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCAGTTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCACAAGATTATGTCCTATATTCGCCTGCAGAGAAATCTTAAAGGTTATGATCCAAATACACGACACTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGCTTTGGCTACCCATGAAGTCCATTTTTCAATTCTTAGAGAGATTGTTTTTACTCCTGGACAAGACAAATGCTTCCTTTGTGGCCAGATGGGTCATATGGCTGCAAACTGTGAAGGAAAGGCAAAACGTAAGGCAGGAGAGTTTGATGAAAAAGGAGATGCTATTGTGGCTAAAAAGCCCTTCCAGTTCCTGAACATTTGGACTTTGAGGGAATATCTGGAGCATGAAATGAGGATACCCAATCTTCCTTTTGAGATTGAGTTTGAGCGCATTGTAGATGATTTTATCTTCATATGCTTTTTTGTTGGCAATGATTTCCTACCACATATGCCTACTCTAGAGATTCGTGAGGGTGCAATTAACTTGTTGATGGCAGTGTACAAGAAGGAATTTAAGGCATTGGGTGGTTACTTAACTGATGGAAGCATGCCAAGTTTGAGTAGGGTGGAGCACTTTATTCAGGCTATTGGATCTTATGAAGATAGAATATTCCAGAAAAGAGCTCGACTGCATCAGCGACAAGCAGAAAGAATAAAGCGTGACAAGTCACAAGTAAGAAGAGGAGATGATGCTGGGCCTCAGGCTATGCCAGAGTCTGCAGTTGCAGTTTCAGGATTCCGTGGCTCTCGTCTTGCTTCAGCTCCAACACCTTCACCATATCAACAATCTGGGCATAAAAAACACAATAAAGTGGACTCCCAGAGGCCTCATAAAGTTGCTAGGTTAACTTCTTCAGGAGCAAGTGTAGCTGCTGCAATTGTTGAAGCCGAGAATAGTCTTGAGATAGATGTTCAAGATAACAAAGATGAATTGAAAGCAAAGCTGAAGGAGATACTTCGTGAGAAATCTGATGCATTCAACTCAAAAAATCCTGAAGAGGACAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGATGAAAAGTTTTATGCTAAAACTCCCGAGGAACGTGAAATGATACGGAAGGATGTTGTCTTGAAATATACTGAAGGCTTATGTTGGGTGATGCACTATTATTATGAAGGTGTTTGCTCTTGGAATTGGTTTTACCCTTATCATTATGCTCCTTTTGCGTCTGATCTGAAGGACCTTGGTGAGCTTAATATTAGCTTTAATCTGGGTGCCCCATTCAAACCATTTGACCAGCTTCTAGGGGTTTTTCCTGCCGCGAGTTCACATGCACTTCCTGAGCCATATAGGAAACTTATGACAGATCCAACCTCGCCAATTATTGATTTTTATCCAATCGATTTTGAAGTGGACATGAATGGAAAACGATATGCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGACGAAACACGTCTTCTTTCAGAAGTCCGAAAAATTGAAAATTTGTTAACGCCGGAGGAAAAACGAAGAAATGCTATAATGTTTGACTTGCTTTTTGTGAATTCTTGTCATCCTCTCTCTGTGTGCATAAGTACACTTGACAACAAATGCAGAAACATGTCAGACAGTGAACGTGCTGAGGTCAAGGAACAAATCAATCCAAATGAAAGTGGTGGAATGAATGGTTATCTATCCTTATGTGGTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTTGCAAGCATGGAAGACGTCACGGACAACCATGTCATATGTGCAATATATAGACTCCCAGATCCACATAAACACATTACCCAACCCCCACAGGGAGTTAAATTTCCTAAGCAGACTGTAACAATTGGGGATCTAAAACCTGAACCTGTTTTATGGCATGAAGATTCAGGCAGGAGACATTATCAAGAAAATGCTAGGCAAAACCCTCCAGGATCTACTTCCGGTCGGGATCTTGGAAATGCAGCACACAGACTCGTTGTCAATTCATTACAGGCGAAGGTTGGTACGAATGGATACCACCATCCCAATAATGGGCCACCTCTATCTTATGCTGCACCAAGGGGTCATTCACAACCATTACCTCCATATTATAATCCTGAAACACACCCAGGATATAGTGCAGTGTCACCACTCCTAGGCCGACTACCGCATCTACCATACGCTGCTGTTCCTGCTCCTCAGCAGTATGGTTATAATCAACCATATGTGCCAGCACCATCCACGTACAATGCTCATCTTCATTCAAATTCTTATGAAAGAAATGATCATCATAGATCTCAATCTTATGAAAGAAATAATCATGGTGGTGGAGGAAGTGCAAGGCATGGATATCATCAATCTTCAGGAAATTATCAGAACGCTAGGTTTATGAGTTCGCCAGATGCATATGGTAGTCATCATCGCGAAGCTGGTCATCCCCGGCAAAACTTCCAATCAGCTAGAGCTCCGTACCAGAACTGGGCTCCTCGGAATAACTCAGATGGCCCCAGAGAATATGGTCAACATCTGCCCAATCAATATTCTCTATTAGATAGAAGAGGTAATAACAGGAGGCCAATGGCACCACCTGGTTATAGTCCCCAATAA 3183 0.4229 MGVPAFYRWLAEKYPMVIVDAIEEEPVVIEGTQIPVDTSKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFCMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDASDAAAEEARLREEFEREGRRLPLKEESQTFDSNVITPGTEFMAVLSVALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEVHFSILREIVFTPGQDKCFLCGQMGHMAANCEGKAKRKAGEFDEKGDAIVAKKPFQFLNIWTLREYLEHEMRIPNLPFEIEFERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFKALGGYLTDGSMPSLSRVEHFIQAIGSYEDRIFQKRARLHQRQAERIKRDKSQVRRGDDAGPQAMPESAVAVSGFRGSRLASAPTPSPYQQSGHKKHNKVDSQRPHKVARLTSSGASVAAAIVEAENSLEIDVQDNKDELKAKLKEILREKSDAFNSKNPEEDKIKLGEPGWKERYYDEKFYAKTPEEREMIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKDLGELNISFNLGAPFKPFDQLLGVFPAASSHALPEPYRKLMTDPTSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIDETRLLSEVRKIENLLTPEEKRRNAIMFDLLFVNSCHPLSVCISTLDNKCRNMSDSERAEVKEQINPNESGGMNGYLSLCGGEPCPPIFRSPVASMEDVTDNHVICAIYRLPDPHKHITQPPQGVKFPKQTVTIGDLKPEPVLWHEDSGRRHYQENARQNPPGSTSGRDLGNAAHRLVVNSLQAKVGTNGYHHPNNGPPLSYAAPRGHSQPLPPYYNPETHPGYSAVSPLLGRLPHLPYAAVPAPQQYGYNQPYVPAPSTYNAHLHSNSYERNDHHRSQSYERNNHGGGGSARHGYHQSSGNYQNARFMSSPDAYGSHHREAGHPRQNFQSARAPYQNWAPRNNSDGPREYGQHLPNQYSLLDRRGNNRRPMAPPGYSPQ 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0879 1060 MobiDBLite consensus disorder prediction 1010 1024 - -
Lal10g0879 1060 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Lal10g0879 1060 MobiDBLite consensus disorder prediction 950 1060 - -
Lal10g0879 1060 Gene3D - 151 376 - -
Lal10g0879 1060 Gene3D - 1 134 - -
Lal10g0879 1060 Coils Coil 122 142 - -
Lal10g0879 1060 Coils Coil 500 527 - -
Lal10g0879 1060 CDD PIN_XRN1-2-like 51 312 - -
Lal10g0879 1060 PANTHER 5'->3' EXORIBONUCLEASE 1 996 IPR027073 -
Lal10g0879 1060 MobiDBLite consensus disorder prediction 830 850 - -
Lal10g0879 1060 Pfam Xrn1 helical domain 325 816 IPR041412 -
Lal10g0879 1060 PANTHER 5'-3' EXORIBONUCLEASE 1 996 - -
Lal10g0879 1060 PIRSF Exonuclease_Xrn2 1 1034 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lal10g0879 1060 MobiDBLite consensus disorder prediction 975 991 - -
Lal10g0879 1060 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Lal10g0879 1060 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Lal10g0879 1060 MobiDBLite consensus disorder prediction 413 427 - -
Lal10g0879 1060 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Lal10g0879 1060 MobiDBLite consensus disorder prediction 413 477 - -
Lal10g0879 1060 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Lal10g0879 1060 Gene3D - 608 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0879 Lal-Chr10 16320859 16329932 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0879 10 16320859 16329932 Lal10g0879 10 16320859 16329932 ECH
Lal25g0532 25 3810849 3831539 Lal10g0879 10 16320859 16329932 LSH