Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0875 ATGGCGGAGGATAATTTAGATGATGGATTGAAGAAGAAGCTCGAATACTTGTCCCTTGTATCAAAGGTTTGCACCGAGTTGGAATCTCACACCGGTACCGGCGACAAGGTCCTCGCTGAGTTCATAACCGAGTTAGGTCGGTCGTCGGAAAACGTTGAAGATTTCGATGCAAAACTGAAAGAGAACGGTGCTGAAATGCCTGATTACTTTGTCCGAACGCTTCTCACCATAATTCACGCAATCCTTCCTCCCAACAAGTCAAAGAAGTCAGATGCTAAGAAAGAGAGTTCCGCGCCGATGGCTAATACAAAGTTTAAGGCTCTGGCCATTGCTGATGATAGGGACCGCGTAAAGGAGCTTCAGAAAGAAATCGAAAACGAAACAGAAGCAGCGCGGCAGAAAGGCAGAGAACGAGGAGAAGAAGAATATGGTTATGGAGACAGAGATAATAAAGATAGGCGCAGAGAGAGGTATGAAAGAGAGGATAGGCATAGAAATAGGGATAGAGAAAGAGTTGTTGGTGAAGATGATAGAAGGGATGATTATAGGAGAAGGGGAAGGGATAGGGATAGAGACAGGGATGTTGGTGAAGATGAAAGAAGGGATGATTACAGGAGAAGGGGAAGGGACAGAGATAATGATAGGGGCAGGGATAGATATGGAAGAGATAAAAGAGATGAAAGAGATGGGTATGAAGAAAATGAACGTGGAAGGGAGAACGGTGATGAGAATGGTGATAGGAAAGGTCGAAGAGAATCGAGGCATGGGGGCGGTGGTTCTAGTGAACCTGAGTTGTATCAGGTTTATAGAGGGAGAGTTTCAAGGGTGATGGATACTGGGTGTTTTGTTCAGCTTGATGATTTTAGAGGGAAAGAGGGCTTGGTGCATGTTTCTCAGATTGCGACTCGGAGGATTACTAATGCTAAGGATGTGGTGAAGCGGGATTTGGAGGTTTTTGTGAAGGTGATATCAGTTTCTGGTCAGAAATTGAGTCTTTCGATGAGAGATGTTGATCAGCATACTGGGAAGGATCTTCTTCCATTGAAGAAGAGCTCGGAGGATGATGTTTCTCGAATGAATCCACAGGATTCGAAGGATGGACCGGTTGCCAGGATGGGTCTTTCGGGTATCAGGATTGTGGAAGAGGATGATCTTGGTAAAACGCGTAGACCTTTGAAGAGGATGAGCTCTCCGGAGATATGGGAAGCAAAACAGTTGATTGCTTCGGGTGTTATGAGTGTTTCCGAGTACCCGACTTATGATGAGGAAGGAGATGGAATGCTGTACCAAGAGGAAGGTGCTGAGGAAGAGCTTGAGATTGAGATGAATGAGGATGAACCTGCCTTCTTGCAAGGGCAGAGCAGATATTCCATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGTTCTCTGGGTCGTGCTGCTGCGCTCCAGTCTGCACTTATAAAGGAGCGTAGAGAGGTACGAGAACAACAACAACGCACAATGCTAGATTCAATTCCAAAGGATCTCAATCGTCCTTGGGAAGACCCTATGCCAGAGTCCGGTGAAAGGCATCTTGCCCAGGAGCTTAGGGGTGTTGGCTTATCAGCCTATGACATGCCAGAATGGAAGAAGGATGCTTATGGGAAAACCATTACTTTTGGGCAAAGGTCAAAGCTTTCTATCCAGGAACAGAGGCAGAGTTTACCAATTTACAAGTTGAAAAAAGAATTGATTCAGGCAGTCCATGATAATCAGGTGTTGGTGGTGATTGGTGAAACGGGTTCGGGCAAGACTACTCAGGTCACACAGTATCTCGCTGAAGCTGGTTACACAACAAGAGGTAAAATTGGATGTACTCAACCACGTAGGGTGGCTGCAATGTCGGTTGCGAAGAGAGTTGCCGAAGAGTTCGGTTGTCGGTTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCAGATACTGTAATCAAGTACATGACAGATGGTATGCTTCTGAGGGAAATATTGGTTGATGAGAATCTATCTCAGTATTCTGTTGTAATGCTTGATGAGGCCCACGAAAGAACTATTCATACTGATGTTCTGTTTGGGCTGCTGAAGCAGCTAGTGAAGCGTAGACCTGAATTGCGATTGATTGTGACTTCTGCTACTTTGGATGCTGAGAAATTCTCAGGATATTTCTTTAACTGTAACATTTTTACAATTCCTGGGAGGACTTTTCCGGTGGAGATTCTTTATACTAAACAACCAGAAAGTGATTACTTAGATGCATCTTTAATCACTGTCCTACAGATCCACTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTGACTGGTCAAGAGGAGATTGATTTTGCTTGCCAGTCTCTCTATGAGAGAATGAAGGGGTTAGGTAAGAATGTTCCTGAGTTGATCATTTTGCCTGTTTATAGTGCCCTTCCTAGTGAAATGCAATCGAGGATATTTGACCCTGCTCCTCCTGGGAAGAGGAAGGTGGTTGTGGCCACTAACATCGCTGAGGCTTCTTTGACTATTGACGGAATATTTTATGTGATTGATCCTGGATTCGCCAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACCGGACCTGGTAAATGTTATCGCCTCTATACCGAGAGTGCATATAGGAATGAGATGTCTCCTACTTCGATTCCGGAGATTCAAAGGATAAATCTCGGGATGACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTTCTGTCTTTTGATTTTATGGACCCACCGTCACCTCAAGCTCTTATTTCTGCCATGGAACAACTTTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAGCTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCGCCATTGTCCAAGATGCTGCTTGCTAGTGTGGACCTTGGATGCAGTGATGAGATTCTGACTATAATTGCCATGATTCAGACTGGCAATATATTTTACAGGCCTAGGGAAAAACAAGCCCAAGCAGATCAGAAGAGGGCGAAGTTTTTCCAGCCTGAGGGTGACCATCTCACACTGCTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGGCCCTGGTGTTTTGAGAACTTTGTTCAATCTCGATCGTTGAGAAGAGCACAGGATGTCAGGAAACAGCTTCTGACCATCATGGATAAGTATAAATTGGATGTTGTAAGTGCGGGTAAAAACTTCACCAAGATCAGGAAGGCTATCACTGCAGGATTCTTTTTCCATGCATCAAGAAAGGACCCTCAGGAAGGTTACAGAACCCTAGTTGAAAACCAGCCTGTGTATATCCATCCAAGTTCTGCTTTGTTCCAGAGACAGCCAGACTGGGTCATCTACCATGAGCTTGTGATGACTACTAAGGAATACATGCGTGAGGTCACTGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCTAGATTCTTCAAAGTGGCAGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGTATAGAACCACTTTATGATAGATACCACGAGCCAAACTCATGGCGTTTGAGTAAACGTCGTGCATGA 3657 0.4463 MAEDNLDDGLKKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEDFDAKLKENGAEMPDYFVRTLLTIIHAILPPNKSKKSDAKKESSAPMANTKFKALAIADDRDRVKELQKEIENETEAARQKGRERGEEEYGYGDRDNKDRRRERYEREDRHRNRDRERVVGEDDRRDDYRRRGRDRDRDRDVGEDERRDDYRRRGRDRDNDRGRDRYGRDKRDERDGYEENERGRENGDENGDRKGRRESRHGGGGSSEPELYQVYRGRVSRVMDTGCFVQLDDFRGKEGLVHVSQIATRRITNAKDVVKRDLEVFVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDVSRMNPQDSKDGPVARMGLSGIRIVEEDDLGKTRRPLKRMSSPEIWEAKQLIASGVMSVSEYPTYDEEGDGMLYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHASRKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0875 1218 CDD DEXHc_DHX8 560 738 IPR044762 GO:0000398|GO:0003724|GO:0005524
Lal10g0875 1218 Gene3D - 260 346 IPR012340 -
Lal10g0875 1218 SMART ha2_5 956 1046 IPR007502 GO:0004386
Lal10g0875 1218 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 680 689 IPR002464 -
Lal10g0875 1218 Coils Coil 476 496 - -
Lal10g0875 1218 CDD S1_DHX8_helicase 266 342 - -
Lal10g0875 1218 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1103 1178 IPR011709 -
Lal10g0875 1218 Coils Coil 110 137 - -
Lal10g0875 1218 PANTHER - 88 1218 - -
Lal10g0875 1218 Gene3D - 537 740 IPR027417 -
Lal10g0875 1218 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 575 738 IPR014001 -
Lal10g0875 1218 Pfam Helicase conserved C-terminal domain 765 895 IPR001650 -
Lal10g0875 1218 Pfam Helicase associated domain (HA2) 957 1045 IPR007502 GO:0004386
Lal10g0875 1218 SMART helicmild6 791 895 IPR001650 -
Lal10g0875 1218 SMART ultradead3 563 747 IPR014001 -
Lal10g0875 1218 MobiDBLite consensus disorder prediction 123 258 - -
Lal10g0875 1218 PANTHER ATP-DEPENDENT RNA HELICASE 88 1218 - -
Lal10g0875 1218 Pfam DEAD/DEAH box helicase 571 721 IPR011545 GO:0003676|GO:0005524
Lal10g0875 1218 MobiDBLite consensus disorder prediction 343 370 - -
Lal10g0875 1218 CDD SF2_C_RHA 742 903 - -
Lal10g0875 1218 ProSiteProfiles S1 domain profile. 266 335 IPR003029 GO:0003676
Lal10g0875 1218 Pfam S1 RNA binding domain 264 333 IPR003029 GO:0003676
Lal10g0875 1218 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 763 936 IPR001650 -
Lal10g0875 1218 MobiDBLite consensus disorder prediction 85 107 - -
Lal10g0875 1218 Gene3D - 741 915 IPR027417 -
Lal10g0875 1218 MobiDBLite consensus disorder prediction 123 265 - -
Lal10g0875 1218 SUPERFAMILY Nucleic acid-binding proteins 264 342 IPR012340 -
Lal10g0875 1218 Gene3D - 940 1039 - -
Lal10g0875 1218 SMART S1_6 264 335 IPR022967 -
Lal10g0875 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 1089 IPR027417 -
Lal10g0875 1218 MobiDBLite consensus disorder prediction 343 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0875 Lal-Chr10 16261876 16268260 Transposed