Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0869 ATGGCTGGTTTTTTCTCCCTAGGTGGAAAAGGAAGTCTACAAAACAAGGAAGAAGAAGAAGAAGAAGAACAAAGACAAGTTAACACACCATTCTTGTTCAGAAACGAAGAGATCTATAATAGAGGGTTTGAGATATGGCCACAGTATCATAGCAACAACAACAACAACAACAACAGCAACTACTACTCTTTTGGTGTAGGACCTAGTAGAAGAAATAACTCATCATCATTGAATAACGTGGTGGACGACGTTGTTTCTGTGTCTGATGAGAGTACTAGATTTGGTTTCACAGTGATGAGGGCTTCTGGATCATCTGGTTTTGGTGGAATAAATTGTCAGGATTGTGGGAACCAAGCAAAGAAAGATTGTCCTCACCTTCGATGCAGGACTTGTTGTAAGAGTCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTCCCCGCTGCAAAACGCCGTGAAAAACAACAACAACAACAACAACAACCACAACAGCAACAGTTTTGGGGAAGAGATCATTCTTCTAGACAAAATAGAGAAAATCAAGGTGTTGCTTCTTTATCTGTCACTACCACAGGGTTGGAGCAAGGACAATTCCCACCTGAACTGAACTCACAAGCTGTGTTTCGGTGTGTGAAAGTGAGTCCAATGTATGCACCAGATGAGAGGTATGCGTACCAAACCGCAGTAAACATAGGAGGACATGTTTTCAAGGGAATTCTCTATGATCAAGGACCAGATAGTCCTTACATCATTGCTGGAGGAGCTGGTGAGGGTTCCTCCGGTGGTGGCGGCGATGCTCAACAACTCACCCTCACCACCGCCACAACCACCGGCAACCCTTTTGACCCTTCTCAACTCTACCCTCCTCCACTCAATGCTTTCATGGCTGGTACGCAATTTTGCCCCCCAAGATCCTAA 924 0.4491 MAGFFSLGGKGSLQNKEEEEEEEQRQVNTPFLFRNEEIYNRGFEIWPQYHSNNNNNNNSNYYSFGVGPSRRNNSSSLNNVVDDVVSVSDESTRFGFTVMRASGSSGFGGINCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREKQQQQQQQPQQQQFWGRDHSSRQNRENQGVASLSVTTTGLEQGQFPPELNSQAVFRCVKVSPMYAPDERYAYQTAVNIGGHVFKGILYDQGPDSPYIIAGGAGEGSSGGGGDAQQLTLTTATTTGNPFDPSQLYPPPLNAFMAGTQFCPPRS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0869 307 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 305 - -
Lal10g0869 307 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 199 247 IPR006511 -
Lal10g0869 307 MobiDBLite consensus disorder prediction 152 173 - -
Lal10g0869 307 MobiDBLite consensus disorder prediction 13 27 - -
Lal10g0869 307 MobiDBLite consensus disorder prediction 150 185 - -
Lal10g0869 307 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 111 153 IPR006510 -
Lal10g0869 307 MobiDBLite consensus disorder prediction 1 28 - -
Lal10g0869 307 Pfam Domain of unknown function (DUF702) 109 248 - -
Lal10g0869 307 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 305 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0869 Lal-Chr10 16198212 16199850 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lal10g0869 DUF702 1.8e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0869 10 16198212 16199850 Lal1g0204 1 1221889 1223522 ECH
Lal10g0869 10 16198212 16199850 Lal10g0869 10 16198212 16199850 ECH
Lal8g0554 8 3848411 3850205 Lal10g0869 10 16198212 16199850 LSH
Lal25g0538 25 3905058 3907407 Lal10g0869 10 16198212 16199850 LSH
Lal10g0869 10 16198212 16199850 Lal21g0130 21 904959 907545 PCT
Lal10g0869 10 16198212 16199850 Lal4g0084 4 507223 509833 PCT
Lal21g0130 21 904959 907545 Lal10g0869 10 16198212 16199850 PCT
Lal4g0084 4 507223 509833 Lal10g0869 10 16198212 16199850 PCT