Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0860 ATGGGAGCAGCTTGTTGTGTTGCTGCAAAGGATCATAATCTACCTACCATAAATGAAGGTCAAAGTTTGCATAGAGATGTTGTCTGTTCACCATCATGGAGCTTTCGATGGGATAGTCAGGGGCATGTTGCTGGCGAAATTGAGAGTACTCCCTATCATGTGTCTCGTGTAGTCAGCAGAAATGTCAGTATGGAGTTAAAAGGTTCGTTAAGTTCTGGACGAGGTAATTTATCTGATGAGGGGAGCACTCTGGAGAATTCTGTAACTCCTATTTCTCACAAGTCCCCTGTTGATGAGGCACTGGTTGCAAATCTGATGACTCCATCTTCAGATCTGTCCATATCAAGCAATTTTTCTACAGTGGTGAAGAATCCATCAGAATCTTCAATACCAAATCTTTCATTTTCAATACCTTCAGTTCTCTCAACACCGACAGCAGATCCTTTGCCTAATCATAATTATCATCATCTCCCCAACTCTACGCCATCAAGATGGGCACATCGTTCTCCAGGACGCCCACTGTTGAGACAGGTTTCTGATAGTCGGATATTGGGCCTGAAATCACCAGACAACCCAATTTCTGAAGGAAGGCCGTCGTTTGTACTTTCCACTTGCAGCAACGAAATTGCACCTGGATCCCAATGTGGATCATCTGATGGCTGGTCCATGCGCACCTTTTCTGAGCTGGTGGCCTCGTCTCAAAGGGGAAGGTGGTCTTTTGACAGTGAGCATTTTGGCTCAGGTCGTCGCAAGATTAGTGGAACTAGTAGCAGGTTCTCATATTCTCCCTCAATGGATCTACAATCTTGTGGTGCTTGCTCGAAACTTTTGACAGAGAGGTCAACATGGAACAGCCAGAAGTTTATTGCAAATAATGATCTCTCGGTTGTTGCCGTACTAGTATGTGGTCATGCATATCATGCAGAATGCTTAGAGACTATGACACTAGAGGCGGATAAGTACGATCCAGCTTGTCCAATCTGCATGATTGGAGATAAGCACTTATCAAAGTTGTCCAGAAAAGCTCTTCAGGCTGAATCAGAGATAAGGGCTAAGAACCACCGGATATCCAGAAACCGCGTAGTTGATAGTTATGTTGATGGTGATTTTGATGTTTTTGATCGACATAAGGACATTGAAAGGGGTGGAAAAGTTTCAAAGATGGAACCTAGCTCAAGTACTGGGAGCTCATCTGGAAAGCCCTTCCTGAGGAGGCACTTTTCTCTTGGGTCCAAGTGGAACCGATCTTTGTCTGAGAATGCTTCTGCTAGGAAGAAAGGCTTTTGGGCGAGATATAGAAAAGATTGA 1308 0.4434 MGAACCVAAKDHNLPTINEGQSLHRDVVCSPSWSFRWDSQGHVAGEIESTPYHVSRVVSRNVSMELKGSLSSGRGNLSDEGSTLENSVTPISHKSPVDEALVANLMTPSSDLSISSNFSTVVKNPSESSIPNLSFSIPSVLSTPTADPLPNHNYHHLPNSTPSRWAHRSPGRPLLRQVSDSRILGLKSPDNPISEGRPSFVLSTCSNEIAPGSQCGSSDGWSMRTFSELVASSQRGRWSFDSEHFGSGRRKISGTSSRFSYSPSMDLQSCGACSKLLTERSTWNSQKFIANNDLSVVAVLVCGHAYHAECLETMTLEADKYDPACPICMIGDKHLSKLSRKALQAESEIRAKNHRISRNRVVDSYVDGDFDVFDRHKDIERGGKVSKMEPSSSTGSSSGKPFLRRHFSLGSKWNRSLSENASARKKGFWARYRKD 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0860 435 SUPERFAMILY RING/U-box 269 329 - -
Lal10g0860 435 Coils Coil 335 355 - -
Lal10g0860 435 PANTHER EXPRESSED PROTEIN 1 429 - -
Lal10g0860 435 MobiDBLite consensus disorder prediction 387 401 - -
Lal10g0860 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 330 IPR013083 -
Lal10g0860 435 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 429 - -
Lal10g0860 435 MobiDBLite consensus disorder prediction 68 92 - -
Lal10g0860 435 ProSiteProfiles Zinc finger RING-type profile. 270 328 IPR001841 -
Lal10g0860 435 SMART ring_2 270 328 IPR001841 -
Lal10g0860 435 MobiDBLite consensus disorder prediction 381 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0860 Lal-Chr10 16137493 16141058 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0860 10 16137493 16141058 Lal10g0860 10 16137493 16141058 ECH
Lal8g0564 8 3912834 3916155 Lal10g0860 10 16137493 16141058 LSH
Lal25g0545 25 3969128 3972540 Lal10g0860 10 16137493 16141058 LSH