Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0854 ATGGATACAATTTTTGCAACTTTGAATCTCAATGCCAATCTAGTTAACAAAGGTGTTGTTAGAAATAGGGGAGGTTTGAACAATAAATTTTGTACTATTCAACCATGCAAGAGTTCAAAAACTAGAAAGTTCAAGCCTGGATTTGCATATGCTGTTTACACACCAGATTTGAATAAAGAGTCTGTGATATTCCAGGAACCCATTTTTCAGACTCCAAAAGCAGATCCAGATAATGTAGCTGCCATTATATTGGGTGGAGGGGTTGGAACTCGACTCTTTCCACTCACTAGCACAAGAGCCAAGCCTGCGGTTCCAATTGGAGGGTGTTACAGACTTATAGATATTCCAATGAGCAATTGCATCAACAGTGGCATCCGAAAAGTATTTGTTTTAACACAATACAACTCTTTCTCCCTCAATGGTCACTTGTCTCGGACATATAATTTCGGAAATGGTGTGAATTTTGGAGATGGTTTTGTGGAGGTGTTGGCTGCTACACAAACTCCCGGAGAAGCCGGGAAGAAATGGTTCCAAGGGACTGCTGATGCTGTGAGACAATTTATATGGGTTTTTGAGGATGCCAGAAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTGTAGGATGGACTATGTGAAGTTTATGGAGCAACATATTAGAACAAATGCTGATATCACAGTTTCATGTGTACCTATGGATAACAGCCGCGCATCAGACTACGAGCTAATGAAAATCGATAGAAAGGGACGGGTTATGCAGTTTGCAGAAAAAGCAAAGGGATTAGATCTGAAGGCAATGCGTGTTGACACCACTCTACTCGGCTTAAACACCGAAGAAGCACAGAAATATCCTTACATTGCTTCCATGGGAGTTTATATATTTAGGACTGAGACTCTTCTGAAACTATTAAGATGGAGCTGTCCTTCATGTAATGACTTTGGATCTGAAATTGTCCCATCTGCTCTGAGGGACCACAAAGTCCAAGCATATCTGTTCAGAGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTAGCACTAACAGAACAGTCTCCAAAATTTGAATTCTATGATCCGAAAACGCCTTTCTTCACTTCTCCAAGATTCCTACCACCTACTAAAGCAGTAAAATGCAAGATTGTGGAAGCAATAATCTCTCATGGTTGCTTCTTGAGTGAGTGTAGTGTTAAACATTCTATTGTTGGTGTTCGCTCACGTTTAGAGTCCGATGTAGAGCTTCAGGATACCATGATGATGGGTGCTGATTACTATCAAACTGATTCTGAAATTAAATCACTGCTAAAAGAAGGAAAGGTTCCAATTGGTATTGGAGAAAATACCAAAATCAGGAATTGTATAATCGACAAGAACGCGAAGATCGGACGAAACGTGATCATTGCAAATGTTGATGGTGTTCAAGAAGCAGACAAGCCTGAAGAAGGATTCTACATCAGATCAGGGATCACAGTTATAGTGAAGAATGCAACAATTGAAGATGGAACAGTTATTTGA 1539 0.397 MDTIFATLNLNANLVNKGVVRNRGGLNNKFCTIQPCKSSKTRKFKPGFAYAVYTPDLNKESVIFQEPIFQTPKADPDNVAAIILGGGVGTRLFPLTSTRAKPAVPIGGCYRLIDIPMSNCINSGIRKVFVLTQYNSFSLNGHLSRTYNFGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDARNKNVEHILILSGDHLCRMDYVKFMEQHIRTNADITVSCVPMDNSRASDYELMKIDRKGRVMQFAEKAKGLDLKAMRVDTTLLGLNTEEAQKYPYIASMGVYIFRTETLLKLLRWSCPSCNDFGSEIVPSALRDHKVQAYLFRDYWEDIGTIKSFFDANLALTEQSPKFEFYDPKTPFFTSPRFLPPTKAVKCKIVEAIISHGCFLSECSVKHSIVGVRSRLESDVELQDTMMMGADYYQTDSEIKSLLKEGKVPIGIGENTKIRNCIIDKNAKIGRNVIIANVDGVQEADKPEEGFYIRSGITVIVKNATIEDGTVI 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0854 512 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 176 184 IPR005836 GO:0005978|GO:0008878
Lal10g0854 512 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 291 301 IPR005836 GO:0005978|GO:0008878
Lal10g0854 512 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 23 512 - -
Lal10g0854 512 Pfam Nucleotidyl transferase 81 358 IPR005835 GO:0009058|GO:0016779
Lal10g0854 512 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 23 512 IPR011831 GO:0005978|GO:0008878
Lal10g0854 512 SUPERFAMILY Nucleotide-diphospho-sugar transferases 79 473 IPR029044 -
Lal10g0854 512 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 85 104 IPR005836 GO:0005978|GO:0008878
Lal10g0854 512 CDD LbH_G1P_AT_C 380 506 - -
Lal10g0854 512 SUPERFAMILY Trimeric LpxA-like enzymes 375 512 IPR011004 -
Lal10g0854 512 Gene3D Hexapeptide repeat proteins 378 512 - -
Lal10g0854 512 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 79 476 IPR011831 GO:0005978|GO:0008878
Lal10g0854 512 CDD ADP_Glucose_PP 81 343 - -
Lal10g0854 512 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 66 377 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0854 Lal-Chr10 16085608 16089576 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0854 10 16085608 16089576 Lal10g0854 10 16085608 16089576 ECH
Lal8g0571 8 3966726 3970295 Lal10g0854 10 16085608 16089576 LSH