Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0850 ATGGTTGTTAGTTTTAGTCCTACTACACCTATCATGATGCCATTCAAGAGTATTAAGGATATGAGAAAGGGCACTGGAAACAAGTATAGAAAAGGGGTAGAAGCCAAACATATGCATCTCTATGGAAAATCTCACATTGCACCGGAATGTTCCTCACCAGTATCATCGGCATCATCATCATCGTCATTATCATCGAGAGTTGGTGAGCAAAGTAGGTGGGCTAACTTACCACCTGAGTTGCTATTAGACATAATTCAAAGGGTGGAAGCCAGTGAAATTTCTTGGCCTGCAAGGAAAGTACTTGTATCATGTGCCTCAGTTTGTAGGTCATGGAGGGAAATAACAAAAGCTGTGGTTAAGACACCAGAACAGTGTGGTTGGCTCACTTTCCCTATATCACTGAAACAGCCTGGTCCAAGAGACACTCCAATTCAGTGTTTTATAAAGAGAGAAAGGGTGACTTCTACATACCGGTTATATCTCGGTCTGAGCCCTGCGCTTTCGGGTGATATGAGCAAACTGTTATTGGCTGCAAAGAAGATTAAAAGGTTAACATGTACAGAATTTGTAATATCATTGGTTGCTGACGATTTCTCGCGAGCTAACAGTACTTACATTGGAAAGCTGAGGTCTAACTTCCTTGGAACAAAGTTTACGATCTTGGATGGCGAGCCTCCACATCCATCGAATTTCAAGTTGCAGCGAAGCGTCCATTTGAAGCAAGTACTTCAAAGAGTTGCTGCTGCTAACTATAACATCGGTACGGTATCTTATGAACTCAATGTTCTTCGTACAAGAGGGCCGAGGAGAATGCAGTGTAAAATGCACTTAATCCCCATATCTGCAATCCAAGAAGGAGGGATTGCCCCGACTCCTTCGAAGTTTACCAATTGCTATAATCAGCATGCATTCCCTATGCCTATTTCAAGTGATACTAGTACTACTCCAGAATCAACCTATAGTGAAAGGAAACCATTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAACTTCAAGGGACGCGTTACAGTCGCGTCCGTGAAGAACTTCCAGCTTGTAGCAGCTGCAGAACCTTCCGAAAATGTATCGGTGGCGCAACAAGAGAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTTACCATGGATTTTCGATATCCGCTTTCGGCTTTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACAAAACCAGCATGTGAATGA 1257 0.4264 MVVSFSPTTPIMMPFKSIKDMRKGTGNKYRKGVEAKHMHLYGKSHIAPECSSPVSSASSSSSLSSRVGEQSRWANLPPELLLDIIQRVEASEISWPARKVLVSCASVCRSWREITKAVVKTPEQCGWLTFPISLKQPGPRDTPIQCFIKRERVTSTYRLYLGLSPALSGDMSKLLLAAKKIKRLTCTEFVISLVADDFSRANSTYIGKLRSNFLGTKFTILDGEPPHPSNFKLQRSVHLKQVLQRVAAANYNIGTVSYELNVLRTRGPRRMQCKMHLIPISAIQEGGIAPTPSKFTNCYNQHAFPMPISSDTSTTPESTYSERKPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSENVSVAQQEKVILQFGKIGKDIFTMDFRYPLSAFQAFAICLSSFDTKPACE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0850 418 Gene3D - 68 119 - -
Lal10g0850 418 PRINTS Tubby superfamily signature 189 205 IPR000007 -
Lal10g0850 418 PRINTS Tubby superfamily signature 205 229 IPR000007 -
Lal10g0850 418 PRINTS Tubby superfamily signature 250 277 IPR000007 -
Lal10g0850 418 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Lal10g0850 418 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Lal10g0850 418 PRINTS Tubby superfamily signature 375 394 IPR000007 -
Lal10g0850 418 PRINTS Tubby superfamily signature 396 418 IPR000007 -
Lal10g0850 418 SUPERFAMILY F-box domain 68 136 IPR036047 GO:0005515
Lal10g0850 418 Pfam Tub family 134 413 IPR000007 -
Lal10g0850 418 ProSitePatterns Tub family signature 2. 403 418 IPR018066 -
Lal10g0850 418 PANTHER TUBBY-RELATED 13 418 - -
Lal10g0850 418 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Lal10g0850 418 PANTHER TUBBY-LIKE F-BOX PROTEIN 13 418 - -
Lal10g0850 418 Gene3D Tubby Protein; Chain A 131 418 IPR025659 -
Lal10g0850 418 Pfam F-box domain 73 118 IPR001810 GO:0005515
Lal10g0850 418 SUPERFAMILY Tubby C-terminal domain-like 122 418 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0850 Lal-Chr10 16050554 16053287 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal10g0850 Tub 1.4e-101 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0850 10 16050554 16053287 Lal10g0850 10 16050554 16053287 ECH
Lal8g0575 8 3994476 4000840 Lal10g0850 10 16050554 16053287 LSH