Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0832 ATGGGCCAAGCAACTTCCACGGCCGCCGTCGCTTCCTGCGCCAAAGGCAACCGTTCCTCTAACTGCATAAAGTCCAGATCCGTAGCTGCCTCGGTTTCTCCGATGCTCAACACCGTCGCCGACGACGTAGGCAACGGTGGAGAAGGAGGTAATCGTGACTACATCTCTGATCTCCCCGATGAGTGTTTAGCTTCGGTTTTCCAGTCACTCAGCTCCGCTGATCGCAACCGTTGCTCCCTCGTTTGCTGGCGGTGGTACCAGATAGAAGGACAGAGCCGCTACCGTCTCTCTCTCATCGCACAATCGGATCTCCTTCCATTCATCCCTTCGCTCTTCTCGCGATTCGACTCAGTTACGAAACTTGCTCTCAAATGCGACCGTAGATCCGTGAGCATCTGTGACGACGCGCTCATCCACATCTCAACGCGTTGCCCTAACCTCACGCGCCTCAAGCTCCGCGCGTGCCGAGAACTTACCGATTCCGGAATCCAAACGTTCGCCATGAACTGCAAGAGTTTGAAGAAGCTCTCGTGCGGATCTTGCACCTTCGGATCCAAAGGCATGAACGCTGTGCTCGATAATTGTGCTAATCTTGAAGAACTCTCCATCAAACGCCTCCGTGGAATCACCGACGTAGAGACAGCTGATCCGATTGGTCCCGGCGCCGCATCGTCTTCTCTCAAAACAATTTGCTTGAAAGAGCTTTACAACGGACAGTGTTTCAGTTCTTTGATTCTCGGCGCGAAGAATCTGAGAACCTTGAAGCTTTTCCGCTGCCCAGGCAATTGGGATAAGCTTCTTCAACTTATGGTGAATCAAGTTACGAGCATCGTTGAGGTCCACCTCGAGAGGCTTCAGATTAGCGACGTTGGTATACAGAGTATTGCTAATTATTCGAATCTAGAAATTTTGCATCTTGTTAAGACACCAGAGTGCACAGATTTTGGTCTTGTTGCAATTGCTGAACGATGTAGGTTGTTAAGGAAGCTTCATATTGATGGATGGAAGGTGAATCGAATAGGCGATGAAGGTTTAATAGCAGTTGCCAAATGCTGCCCTAATTTACAGGAACTAGTGCTTATTGGTGTTAACCCTACGAAATTGAGTTTGGAAATGTTGGCATCAAATTGTTTGAATCTCGAGCGGTTGGCTTTGTGTGGAAGTGATTCTGTTGGTGACCCTGAGATATCGTGCATTGCAGTGAAATGTGTAGCGTTGAAGAAACTCTGTATTAAGAGTTGTCCGGTTTCTGATCATGGGATGGAAGCGCTGGCGAGTGGGTGTCCGAATTTGGTGAAAGTCAAGGTGAAGAAGTGTAAGGGTGTGACCTCTGAGGGTGGGGATTTGTTGAGGTTAACTAGAGGGTCACTTGCTGTTAATTTAGATACTGGTCAAAGTGAAAATGAAAATCCAGGTGCAAGTGCTAGTAATGGTGGAGCTCAAGCAAATGGCATCGAGTTTCCTCCAATTCCTAACCAAACTGCTGCAGCAGGAGCATCGACTACTATTGCTTCAAGCTGTACTGGTCGATCGGCTTCGTTCAAGTCAAGTTCAAGGCATTTGTCTGGGAGGAGTTTAGTGGTTCACACTTTGAGAAGATGGTCAGGTACTATGGGTAGCACTAGTGCCCGCCATTAG 1638 0.4847 MGQATSTAAVASCAKGNRSSNCIKSRSVAASVSPMLNTVADDVGNGGEGGNRDYISDLPDECLASVFQSLSSADRNRCSLVCWRWYQIEGQSRYRLSLIAQSDLLPFIPSLFSRFDSVTKLALKCDRRSVSICDDALIHISTRCPNLTRLKLRACRELTDSGIQTFAMNCKSLKKLSCGSCTFGSKGMNAVLDNCANLEELSIKRLRGITDVETADPIGPGAASSSLKTICLKELYNGQCFSSLILGAKNLRTLKLFRCPGNWDKLLQLMVNQVTSIVEVHLERLQISDVGIQSIANYSNLEILHLVKTPECTDFGLVAIAERCRLLRKLHIDGWKVNRIGDEGLIAVAKCCPNLQELVLIGVNPTKLSLEMLASNCLNLERLALCGSDSVGDPEISCIAVKCVALKKLCIKSCPVSDHGMEALASGCPNLVKVKVKKCKGVTSEGGDLLRLTRGSLAVNLDTGQSENENPGASASNGGAQANGIEFPPIPNQTAAAGASTTIASSCTGRSASFKSSSRHLSGRSLVVHTLRRWSGTMGSTSARH 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0832 545 SUPERFAMILY F-box domain 47 89 IPR036047 GO:0005515
Lal10g0832 545 SMART LRR_CC_2 144 169 IPR006553 -
Lal10g0832 545 SMART LRR_CC_2 274 298 IPR006553 -
Lal10g0832 545 SMART LRR_CC_2 403 427 IPR006553 -
Lal10g0832 545 SMART LRR_CC_2 377 402 IPR006553 -
Lal10g0832 545 SMART LRR_CC_2 352 376 IPR006553 -
Lal10g0832 545 SMART LRR_CC_2 299 323 IPR006553 -
Lal10g0832 545 SMART LRR_CC_2 324 351 IPR006553 -
Lal10g0832 545 SMART LRR_CC_2 195 233 IPR006553 -
Lal10g0832 545 SMART LRR_CC_2 170 194 IPR006553 -
Lal10g0832 545 SMART LRR_CC_2 428 455 IPR006553 -
Lal10g0832 545 MobiDBLite consensus disorder prediction 462 481 - -
Lal10g0832 545 MobiDBLite consensus disorder prediction 462 491 - -
Lal10g0832 545 ProSiteProfiles F-box domain profile. 52 98 IPR001810 GO:0005515
Lal10g0832 545 Pfam F-box domain 55 88 IPR001810 GO:0005515
Lal10g0832 545 SUPERFAMILY RNI-like 87 448 - -
Lal10g0832 545 SMART fbox_2 58 98 IPR001810 GO:0005515
Lal10g0832 545 PANTHER F-BOX PROTEIN SKIP2 41 482 - -
Lal10g0832 545 Gene3D Ribonuclease Inhibitor 91 464 IPR032675 -
Lal10g0832 545 Pfam Leucine Rich repeat 144 167 IPR001611 GO:0005515
Lal10g0832 545 Gene3D - 53 90 - -
Lal10g0832 545 PANTHER UNCHARACTERIZED 41 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0832 Lal-Chr10 15941715 15943352 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0832 10 15941715 15943352 Lal10g0832 10 15941715 15943352 ECH
Lal8g0651 8 4596820 4598466 Lal10g0832 10 15941715 15943352 LSH