Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0822 ATGATAAGAAGAAGAAACAGAAGCTGCACAGAGAAGAGAAAGAACAAAAAAGAGAAACAATACTATGGGATAAGGATGAGAAAGTGGGGAAAATGGGTGGCGGAGATAAGAGAACCAAACAAGAGGTCAAGGATATGGTTGGGTTCTTACTCCACCGCTATCGCCGCCGCACGCGCCTATGACACCGCCGTGTTCTACCTGAGAGGTCCTTCAGCTGATAGAGTTAACTTTCCAGAATTGTTGTTCCAAGACAAAGACGTTGACTTTTTGTGCAGGAGAGAGGATATGTCTGCTGATTCTATAAAGAAAAAAGCTACACAAGTTGGTGCTAGAGTTGATGCTTTTCAAATTGCTCTTCATGCCTCTTCAATCAACAATTCATCTTCTACCTATTCCCTCAAGCCTGATTTGAATGAGTTTCCTAAACCTGAAGATTCCTTCTATTGA 447 0.4206 MIRRRNRSCTEKRKNKKEKQYYGIRMRKWGKWVAEIREPNKRSRIWLGSYSTAIAAARAYDTAVFYLRGPSADRVNFPELLFQDKDVDFLCRREDMSADSIKKKATQVGARVDAFQIALHASSINNSSSTYSLKPDLNEFPKPEDSFY 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0822 148 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Lal10g0822 148 CDD AP2 19 80 IPR001471 GO:0003700|GO:0006355
Lal10g0822 148 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 146 - -
Lal10g0822 148 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 146 - -
Lal10g0822 148 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Lal10g0822 148 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lal10g0822 148 Pfam AP2 domain 21 69 IPR001471 GO:0003700|GO:0006355
Lal10g0822 148 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Lal10g0822 148 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lal10g0822 148 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0822 Lal-Chr10 15881169 15881615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0822 16 120 AP2-EREBP Transcription Factor Family AT5G67190 70.476 2.22e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal10g0822 AP2 1.2e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0822 10 15881169 15881615 Lal10g0822 10 15881169 15881615 ECH
Lal8g0643 8 4523317 4523787 Lal10g0822 10 15881169 15881615 LSH