Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0821 ATGGCGCAGAACCAGAGTCCTCAAAACGGTGTCGTTTCTGGTGCTCCGAACGCGAATACCGTTGCGACGTCGTTGTACGTTGGAGATCTTGACTTTAATGTCAACGATTCTCAGCTCTATGATTTGTTCAACCAGGTTGGACAAGTTGTTTCAGTTAGGGTTTGTCGTGATTTAACCACACATCGATCACTAGGTTACGGTTATGTTAACTTCAGTAACTCTCAGGATGCGATAAGAGCATTGGATGTGCTGAATTTTACTCCACTGAATAACAAACCTATTAGGGTTATGTATTCTCATAGGGATCCTAGTATTCGCAAGAGTGGTACTGCCAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGGCTTACATGATACATTTTCTGCCTTTGGACAAATTCTTTCATCCAAAATAGCGACTGATGCTTCGGGTCAATCTAAAGGCTATGGTTTTGTTCAGTTTGACAGTGAAGAGGCTGCACAAAATGCTATTGATAAGTTGAATGGCATGCTGTTGAATGATAAGCAGGTGTATGTAGGTCATTTCCTACGGAAGCAAGATAGAGACAATGCTGTCAGCAAGACAAGATTCAATAATGTCTATGTGAAAAACTTATCAGAGTCAATTACAGATGATGATTTGAAGAAATTGTTTGGTGAATATGGGACGATTACTAGTTCTGTAGTAATGAGAGATGGTGATGGGAAATCAAAGTGTTTTGGTTTTGTCAACTTTGAAAACCCAGATGATGCCGCTAAAGCTGTTGATGCACTCAATGGGAAGAAAATCGATGACAAGGAGTGGTATGTTGGTAAAGCCCAGAAAAAATCTGAACGAGAACAAGAACTCAAAGGACGTTTTGAGCAGAGTATAAAAGAGGTTCCTGAAAAAAATCATGGCGTGAACTTGTATCTCAAGAACTTGGATGATACCGTCGGTGATGAAAAGCTGAAAGAACTGTTTGCCGAGTTTGGAACAATTACATCGTATAAGGTTATGCGAGACCCAAGTGGAGTAAGCAGAGGTTCAGGATTTGTTGCATTTTCAACTCCAGAGGAAGCTTCTCGAGCTCTTGCTGAGATGAATGGTAAAATGATCGCTGGCAAACCTCTATATGTTGCTCTTGCACAGAGAAAAGAAGAGAGAAGGGCAAGGTTACAGGCACAATTTTCTCAAATGAGGCCTGTTGCAATTACTCCTTCTGTTGCACCTGGAATGCAACTTTACCCTCCTGGTGCTCCTGGTTTAGGACAGCCATTTTTGTATGGGCAAGGACCCCCATCCACAATTCCTCCACAAGCTGGATTTGGTTACCAGCAGCAGCTTGTTCCTGGGATGAGACCTGGCAGTGGTCCAATGCCAAGCTTCTTTTTACCAATGGTCCAGCAAGGCCAGCAAGGCCAGCGTCCAGCTGGGCGCCGTGGAGTAGGCCCTGCGCAACAACCCCAACAACCAGTGCCAATGATGATGCAGCAGATGGTTCCAAGGGGACGTGTCTATCATTACCCTCCTGGTCGAGATGCCTCACTTACAGGAATGGTGCCAGCCCCTTATGACATGGGTGGTCTTCCAATCCGTGATGCTATGGGTCAGCCTATGCCCATTCAGGCTTTGGCTACAGCTCTTGCGAATGCTCCTCATGAACAGCAGAGGACAATGCTTGGTGAAGCTTTGTACCCGCTCGTGGATCAGCTCGAACGTGATTCCGCAGCTAAGGTTACAGGCATGCTTTTAGAGATGGACCAGCCTGAGGTATTGCACCTTATTGAGTCGCCAGATGCGCTGAAGGCTAAAGTTTCCGAAGCGATGGATGTGCTGAGAAATGTCGGTCAACAGCAAGCAAACATACCTGCTGATCAATTTGCCTCACTCTCTCTCAACGACAATCTTGTTGCTTAG 1911 0.4479 MAQNQSPQNGVVSGAPNANTVATSLYVGDLDFNVNDSQLYDLFNQVGQVVSVRVCRDLTTHRSLGYGYVNFSNSQDAIRALDVLNFTPLNNKPIRVMYSHRDPSIRKSGTANIFIKNLDKAIDHKGLHDTFSAFGQILSSKIATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLLNDKQVYVGHFLRKQDRDNAVSKTRFNNVYVKNLSESITDDDLKKLFGEYGTITSSVVMRDGDGKSKCFGFVNFENPDDAAKAVDALNGKKIDDKEWYVGKAQKKSEREQELKGRFEQSIKEVPEKNHGVNLYLKNLDDTVGDEKLKELFAEFGTITSYKVMRDPSGVSRGSGFVAFSTPEEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPGMQLYPPGAPGLGQPFLYGQGPPSTIPPQAGFGYQQQLVPGMRPGSGPMPSFFLPMVQQGQQGQRPAGRRGVGPAQQPQQPVPMMMQQMVPRGRVYHYPPGRDASLTGMVPAPYDMGGLPIRDAMGQPMPIQALATALANAPHEQQRTMLGEALYPLVDQLERDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVSEAMDVLRNVGQQQANIPADQFASLSLNDNLVA 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0821 636 SUPERFAMILY RNA-binding domain, RBD 202 386 IPR035979 GO:0003676
Lal10g0821 636 CDD RRM4_I_PABPs 304 382 - -
Lal10g0821 636 Gene3D - 104 192 IPR012677 -
Lal10g0821 636 CDD RRM2_I_PABPs 109 185 IPR045305 -
Lal10g0821 636 SMART rrm2_1 112 184 IPR003954 GO:0003676
Lal10g0821 636 SMART rrm2_1 306 378 IPR003954 GO:0003676
Lal10g0821 636 SMART rrm2_1 203 275 IPR003954 GO:0003676
Lal10g0821 636 SMART rrm2_1 24 97 IPR003954 GO:0003676
Lal10g0821 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 375 IPR000504 GO:0003723
Lal10g0821 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Lal10g0821 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Lal10g0821 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Lal10g0821 636 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 24 611 IPR006515 GO:0003723
Lal10g0821 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Lal10g0821 636 Gene3D - 193 293 IPR012677 -
Lal10g0821 636 Gene3D - 294 394 IPR012677 -
Lal10g0821 636 Pfam Poly-adenylate binding protein, unique domain 546 610 IPR002004 GO:0003723
Lal10g0821 636 SUPERFAMILY RNA-binding domain, RBD 23 192 IPR035979 GO:0003676
Lal10g0821 636 PANTHER POLYADENYLATE-BINDING PROTEIN 14 620 - -
Lal10g0821 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Lal10g0821 636 SMART rrm1_1 306 378 IPR000504 GO:0003723
Lal10g0821 636 SMART rrm1_1 203 275 IPR000504 GO:0003723
Lal10g0821 636 SMART rrm1_1 24 97 IPR000504 GO:0003723
Lal10g0821 636 SMART rrm1_1 112 184 IPR000504 GO:0003723
Lal10g0821 636 Gene3D - 2 103 IPR012677 -
Lal10g0821 636 SUPERFAMILY PABC (PABP) domain 487 622 IPR036053 GO:0003723
Lal10g0821 636 SMART poly_2 550 613 IPR002004 GO:0003723
Lal10g0821 636 CDD RRM1_I_PABPs 24 103 - -
Lal10g0821 636 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Lal10g0821 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 382 IPR000504 GO:0003723
Lal10g0821 636 MobiDBLite consensus disorder prediction 468 487 - -
Lal10g0821 636 CDD RRM3_I_PABPs 201 280 - -
Lal10g0821 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Lal10g0821 636 PANTHER RNA BINDING PROTEIN 14 620 - -
Lal10g0821 636 Gene3D - 534 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0821 Lal-Chr10 15871794 15876720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0821 22 635 Eukaryotic Initiation Factors Gene Family AT1G49760 70.064 0.0 833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0821 10 15871794 15876720 Lal10g0821 10 15871794 15876720 ECH
Lal8g0641 8 4502340 4508398 Lal10g0821 10 15871794 15876720 LSH
Lal25g0591 25 4421474 4426515 Lal10g0821 10 15871794 15876720 LSH