Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0820 ATGCAAGAGCAGAGAAGTACAATTGGTTCCTTGCCTGAAACCATAGAATTTGATTATGGATCTACATCGAGTAGCGCTACAGTTAATCCACCAATTTGCTTGACTAATATGCAGAATCCTGCAGAAAATCGCATACCTGAATATTTACTTTCCCCTGCCCCCAGTGAGATTAACCCATCTTATGTGAATTATATAAACCGGGACTGGCAGAACATAAGTGCATGGAGTTCAGGTGAGCCAAGTTCGAGTAATACACAGAAAGAGGTTAACAATAATGAGCAGAAAAGAGAACTGGGATGCTTATCTTCAGTAAGTGCTAGTGCTATAGCTGGTCCAATACTAGAGAGGCGCTTTAGACCAGCCAATGCTCGTTCTCTGGAGAGTGTCATTACAAGTTCTATGCCTATGCACAGCTCCAATTCTCATTTGGTGTCCCAGAGTCTTAATTTAAATGCAAGCTTAGCAGATAGTGGCAGTAATAATAGCCATCATGCGGAACATCCCAACTTGCCCAAGTCTAGTGGACCAGTAAATGAGCATATTCCACCTATTACTAGTTCTGGTTCTTTTATGCTTCCTTCTGGATTTAACGGCTTTTTGATTGAGGATAGTGATGGTAGGCCAGGTTGTTCTCAAGACACTCGCCGTGTATCTTGTAAAAGAAAGGCCGTTGAACTAGACTTTGGACAATCTTCAGATGTTGGAAGTTCTAGCTACAGCCAGAATAGAGATGGCAGTGCTTGGAACGCTCTACCTACTCAGAATTATGCAGGTAGCAGATTTAGCAGATCTACTTCAGCAGAACTGGTAAATGCAAGACTTGGCCTCAGTATGGGTAACGTTACCTCTGAAAGTGTTCTGGATACAAATGTTGCAGGAAGCTCAGAAAGCTTCCCCAGAAATTGTCGTTTGCGGATAAATCCTTCAAGCCAACAAAATTCCATTCCTCCAGCTGCATTTCCAAGTGGGAGTGTGATTAGGAATACTGGCGTTTCTTCGTCCACTCCTATGTTGCAAAGGATTCATCCTGTTGATAATTCTCTAGACTTGTTGAGGTCAGTACCACCAGTTGATACTATGATTCCTCAAAGCCAGCCCCTTCTAGTTCATGTTCCTGCTTTACCAAGGAATGCACAATCATTTAGGAGGAATGGTGGGTCTAGCTCAACAAACAACCATTCATCAAACTCGATTATAAGTGCAACTAGGGATAATCTACCACAACTGGAAGCTAGCTCAAGAAGTATGGCTAGAAACATTATAGAACAATCGATGTTTTTACCTCCAACCAATTTAAGAAATTTGGTTCGAAATCCCACAATTAGAGCTTCAAGTAGTGCAAATTTAAGTATCCCAGGAAATGTTGCTTCATCCGAACCTGGGTCAAATTCTGCTATCAATCCACCATCTGTCTCACCATGGGTTTCACATCCTAATCCTCAACAGCATTATCCACGCAGGTTAGCTGAATATGTTCACCGGCCCATGTTTTCTCCTGGTTCCGAGGCTGCTGGAAATCCAATCAGTAATTATTCTTCCGTGCGTAGTCCTGCTATTTCATCTGTATTGTCATCGGGGGTGGTACATCCGGGGTCATCTTCATTGTTGGATAGGCCAGGTGATAGTGAATATGCAATTGCTCCTTCATTGAGATCATTGACCGGTGCAGGAAGTGGTAGAATTGTATCTGAGCTCCGCGATGTGTTGGGCCGCATGCGTAGGGGTGGGAGCCTGCGGCTTGAGGATGTTATGATCCTCAACCAGTCATTGTTTCCTGGAATAGCTGATAGTCATGATCGGCACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTTTGGAAGAGCGCATGGGAAATGTTAGCACTGGATTGAGTGAAGAAACCATATTGAAACATTTGAAACAGAAGAAGTATTCAGTTGAAACAGGATCTCAGCATGAGGCAGAACCCTGTTGCGTTTGTCAGGAGGAGTATAAGGATGGAGACGATATGGGATCACTGAATTGCGGACATGATTTCCATAAGGAGTGTGTAAAACAATGGCTAATGCATAAGAACCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACATAA 2115 0.4312 MQEQRSTIGSLPETIEFDYGSTSSSATVNPPICLTNMQNPAENRIPEYLLSPAPSEINPSYVNYINRDWQNISAWSSGEPSSSNTQKEVNNNEQKRELGCLSSVSASAIAGPILERRFRPANARSLESVITSSMPMHSSNSHLVSQSLNLNASLADSGSNNSHHAEHPNLPKSSGPVNEHIPPITSSGSFMLPSGFNGFLIEDSDGRPGCSQDTRRVSCKRKAVELDFGQSSDVGSSSYSQNRDGSAWNALPTQNYAGSRFSRSTSAELVNARLGLSMGNVTSESVLDTNVAGSSESFPRNCRLRINPSSQQNSIPPAAFPSGSVIRNTGVSSSTPMLQRIHPVDNSLDLLRSVPPVDTMIPQSQPLLVHVPALPRNAQSFRRNGGSSSTNNHSSNSIISATRDNLPQLEASSRSMARNIIEQSMFLPPTNLRNLVRNPTIRASSSANLSIPGNVASSEPGSNSAINPPSVSPWVSHPNPQQHYPRRLAEYVHRPMFSPGSEAAGNPISNYSSVRSPAISSVLSSGVVHPGSSSLLDRPGDSEYAIAPSLRSLTGAGSGRIVSELRDVLGRMRRGGSLRLEDVMILNQSLFPGIADSHDRHRDMRLDVDNMSYEELLALEERMGNVSTGLSEETILKHLKQKKYSVETGSQHEAEPCCVCQEEYKDGDDMGSLNCGHDFHKECVKQWLMHKNLCPICKTTGLAT 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0820 704 MobiDBLite consensus disorder prediction 378 404 - -
Lal10g0820 704 MobiDBLite consensus disorder prediction 446 479 - -
Lal10g0820 704 MobiDBLite consensus disorder prediction 446 482 - -
Lal10g0820 704 MobiDBLite consensus disorder prediction 153 168 - -
Lal10g0820 704 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 703 IPR045191 GO:0061630
Lal10g0820 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 701 IPR013083 -
Lal10g0820 704 SMART ring_2 657 697 IPR001841 -
Lal10g0820 704 SUPERFAMILY RING/U-box 647 700 - -
Lal10g0820 704 ProSiteProfiles Zinc finger RING-type profile. 657 698 IPR001841 -
Lal10g0820 704 MobiDBLite consensus disorder prediction 153 186 - -
Lal10g0820 704 Pfam Ring finger domain 657 698 IPR001841 -
Lal10g0820 704 MobiDBLite consensus disorder prediction 1 22 - -
Lal10g0820 704 MobiDBLite consensus disorder prediction 380 404 - -
Lal10g0820 704 CDD RING-H2_TTC3 656 698 - -
Lal10g0820 704 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0820 Lal-Chr10 15860942 15867302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0820 305 704 C3H Transcription Factor Family AT2G15530 39.486 3.75e-69 238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0820 10 15860942 15867302 Lal10g0820 10 15860942 15867302 ECH
Lal8g0639 8 4482406 4489343 Lal10g0820 10 15860942 15867302 LSH
Lal25g0589 25 4394193 4401110 Lal10g0820 10 15860942 15867302 LSH
Lal8g0447 8 2978437 2983738 Lal10g0820 10 15860942 15867302 LSH
Lal25g0466 25 3224309 3228232 Lal10g0820 10 15860942 15867302 LSH
Lal10g0820 10 15860942 15867302 Lal21g0198 21 1311167 1316663 PCT
Lal21g0198 21 1311167 1316663 Lal10g0820 10 15860942 15867302 PCT