Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0819 ATGGCTGCAAGTGGCAATAGCAATGATGAAAGTATTCAATTAACAAATCCATTTTCAATGAAACCCATCATTCCTTCTGATTCTGAAGACTTATCTTCTTTGTTTCACCAACTCCTTTCTCCACCACCATCAGGAATGGACCCAAATAATTTTTATGCTTACATCCCTGACCCTTCTCTTTTTCTTCACAACTCTCATTCCAACAACACCACTACATTTGATTTCACTTCTTCTCTTCAGAAGAATGGTGAGGCTTCGGAGTTGCCATCATCAAAGCCTGTTCCACCATCACGTACTTCCTCAAAGAGGAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGAATTAATGAGAAAATGAAAGCCCTGCAGAACTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTACAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGACTTTACCAGGAGGACTGAGACCTATGATATTGCCTCAGACAGGGTTGAATTTTGATGAGGTTAATGGATTTCACAATTCTAACAGTGGAATTGCCTCATCTGAAAATGATGAAAGCTTCGCGCCGCCTTCTTATAATTTTTCTAAGCATTTCAGCTTCTCAAATCAGTCTATTGTTCCACCATCAGTGATAAATGTATCTACTTCACATCCCTCAACTAGTATCCAACCACATATCAAGGATTCATTTTGCAGCAACATGCCTCAACTGCTTCTGGATACAACAAGGATGGGAAAAACTCCTTCTCCGGATGTGTCTTAA 837 0.3919 MAASGNSNDESIQLTNPFSMKPIIPSDSEDLSSLFHQLLSPPPSGMDPNNFYAYIPDPSLFLHNSHSNNTTTFDFTSSLQKNGEASELPSSKPVPPSRTSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMTLPGGLRPMILPQTGLNFDEVNGFHNSNSGIASSENDESFAPPSYNFSKHFSFSNQSIVPPSVINVSTSHPSTSIQPHIKDSFCSNMPQLLLDTTRMGKTPSPDVS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0819 278 MobiDBLite consensus disorder prediction 73 102 - -
Lal10g0819 278 MobiDBLite consensus disorder prediction 1 25 - -
Lal10g0819 278 MobiDBLite consensus disorder prediction 73 119 - -
Lal10g0819 278 CDD bHLH_AtPIF_like 105 167 - -
Lal10g0819 278 PANTHER TRANSCRIPTION FACTOR SPATULA 76 261 - -
Lal10g0819 278 MobiDBLite consensus disorder prediction 103 119 - -
Lal10g0819 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 165 IPR036638 GO:0046983
Lal10g0819 278 Gene3D - 100 164 IPR036638 GO:0046983
Lal10g0819 278 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 76 261 IPR031066 -
Lal10g0819 278 MobiDBLite consensus disorder prediction 1 22 - -
Lal10g0819 278 SMART finulus 111 160 IPR011598 GO:0046983
Lal10g0819 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 154 IPR011598 GO:0046983
Lal10g0819 278 Pfam Helix-loop-helix DNA-binding domain 109 155 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0819 Lal-Chr10 15854030 15856592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0819 68 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 72.727 1.24e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal10g0819 HLH 2.5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0819 10 15854030 15856592 Lal10g0819 10 15854030 15856592 ECH