Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0801 ATGCAACAATCCAACGACTCTGATTCTTCCTCACAACAACAACACTCTGAGCAGCAGAACCACCACCGTCAAACCCAACCGCCGCCTCATGTAGCGGTGGCGCAACATTGGTTACCGATGCAGTACCCGCCTATGGTAATGCCACACCACATGTTGCCGCCTCAACCTTACGCGCCGCCGCCACCACCTTACTTGCCTTACCACCATTACTACCAGTATCAGCATGTGCCGCACGTGACTCATCATCAACAACATCATCATCATGGATCTAATAGTGGCGAGAATAAAACCATATGGGTTGGTGATTTGTTTCACTGGATGGATGAAAATTATCTACATCGCTGTTTTGCTTCCACTGGAGAGATTTCGTCCATCAAGGTTATTCGTAATAAGCATACTTGTATATCAGAGGGTTATGGATTTGTGGAATTTTATTCACATGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGTATTTTGATGCCCAATACGGAGCAACCTTTCCGCCTGAACTGGGCAACACTTGGCACAGGCGACAAGGGTTCAGATAATGTTCCTCATCTCTCTATTTTTGTTGGAGATTTAGCTGCAGATGTTACAGATAGCTTATTGCATGAAACATTTTCTACTAGATACCCTTCTGTTAAATCTGCAAAAGTTGTTTTTGATGTCAATACCGGCCATTCAAGGGGCTATGGTTTCGTTAGGTTTGGAGATGATAATGAGAGGTCCCAGGCTATGACTGAAATGAATGGTGTTCACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGAAAATCATCTGGCTATCAACAAGGAGGCCAATCAAATGGCGCATCCAACCAAGCAGAAGTGGACTCTACCAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCAGTCATTTTCCCAGTACGGTGAGATAGTCTCTATTAAGATACCCGTCGGAAAGGGGTGTGGCTTTGTCCAGTTTGCTAACAGAAATAGCGCTGAAGAAGCCTTGCAGAAGCTAAATGGTACAATGATCGGCAAGCAAACAGTTCGCCTTTCTTGGGGCCGCAATCCAGCTAATAAGCAGGCAATTTCTCTCTCTTTCTTTCTCATGATTATTTTTAGAATGGATTTCGGCAGCCCCTGGAATGGGGCGTATTACGGGGCCCCTGTTTATGATGGATACGGATATGCTTTGCCGCTTTCTCCCGACCCAAGAATATATGGTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGTCACCAACAGCAAGTTAGCTGA 1308 0.4526 MQQSNDSDSSSQQQHSEQQNHHRQTQPPPHVAVAQHWLPMQYPPMVMPHHMLPPQPYAPPPPPYLPYHHYYQYQHVPHVTHHQQHHHHGSNSGENKTIWVGDLFHWMDENYLHRCFASTGEISSIKVIRNKHTCISEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWATLGTGDKGSDNVPHLSIFVGDLAADVTDSLLHETFSTRYPSVKSAKVVFDVNTGHSRGYGFVRFGDDNERSQAMTEMNGVHCSSRPMRIGAATPRKSSGYQQGGQSNGASNQAEVDSTNTTIFVGGLDPNVTDEDLRQSFSQYGEIVSIKIPVGKGCGFVQFANRNSAEEALQKLNGTMIGKQTVRLSWGRNPANKQAISLSFFLMIIFRMDFGSPWNGAYYGAPVYDGYGYALPLSPDPRIYGAAYGAYPVYGGHQQQVS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0801 435 Gene3D - 282 376 IPR012677 -
Lal10g0801 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 176 IPR000504 GO:0003723
Lal10g0801 435 CDD RRM3_NGR1_NAM8_like 293 364 - -
Lal10g0801 435 Gene3D - 179 281 IPR012677 -
Lal10g0801 435 Gene3D - 95 175 IPR012677 -
Lal10g0801 435 CDD RRM1_SECp43_like 97 175 - -
Lal10g0801 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 165 IPR000504 GO:0003723
Lal10g0801 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 257 IPR000504 GO:0003723
Lal10g0801 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 359 IPR000504 GO:0003723
Lal10g0801 435 MobiDBLite consensus disorder prediction 269 289 - -
Lal10g0801 435 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 30 434 - -
Lal10g0801 435 SUPERFAMILY RNA-binding domain, RBD 173 283 IPR035979 GO:0003676
Lal10g0801 435 SUPERFAMILY RNA-binding domain, RBD 283 370 IPR035979 GO:0003676
Lal10g0801 435 MobiDBLite consensus disorder prediction 1 26 - -
Lal10g0801 435 MobiDBLite consensus disorder prediction 251 289 - -
Lal10g0801 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 434 - -
Lal10g0801 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Lal10g0801 435 CDD RRM2_SECp43_like 189 267 - -
Lal10g0801 435 SMART rrm1_1 97 172 IPR000504 GO:0003723
Lal10g0801 435 SMART rrm1_1 295 362 IPR000504 GO:0003723
Lal10g0801 435 SMART rrm1_1 190 264 IPR000504 GO:0003723
Lal10g0801 435 MobiDBLite consensus disorder prediction 1 29 - -
Lal10g0801 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 366 IPR000504 GO:0003723
Lal10g0801 435 SUPERFAMILY RNA-binding domain, RBD 64 176 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0801 Lal-Chr10 15723276 15727120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0801 98 372 Eukaryotic Initiation Factors Gene Family AT2G23350 30.070 9.00e-31 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0801 10 15723276 15727120 Lal10g0801 10 15723276 15727120 ECH
Lal8g0617 8 4300329 4304337 Lal10g0801 10 15723276 15727120 LSH
Lal25g0572 25 4273467 4277212 Lal10g0801 10 15723276 15727120 LSH