Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1948 ATGTCGGAGGCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGGTGCCAGAGATTCTGCCGGGATCCAACGGAGCTCCGGCTTCGTCTTCCGGTGATGTTGTTGTTGATGACAGTGTTGACGCTTCTTCCACCAACTCTTCAAGGGAGTCTCATACCAACACAGATGCACAAGAGAAAGATTTTGATAAGGACACATTGGGAGAAAAACCAACTGATGACAAGAAGGAAGATGGAGCCCCCGCCCAATCATCAGAAGAGGTCGCCAATCCAGATACTGCCTCTGGAACCTGTGAAGAATCCATCATCCAGTCCACCGAGAGGGAGGCTACTACATTGAAAACTACAAAGACTGAAGAAGAACAGGGCGAGACAAGTAATTCACAGGACAAGAACCTCAAAAAACCAGACAAAATACTACCTTGTCCTCGCTGTAATAGCATGGACACCAAGTTCTGCTATTATAATAATTACAATGTCAACCAACCCCGCCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGGACCATGAGGAACGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGCGTGGCTTCTCACTATCGCCAGATTACTGTTTCTGAAGCAGCCCTTCAGAATCCTAGAACGGACTTGCCAAATGGAGCATATCATCCTTCCTTGAAGTGCAATGGTACGGTCCTTACATTTGGAACTGATACACCCTTGTGTGAGTCAATGGCATCTGTTTTGAACCTTGCTGATAAAACCATGCACAATTACACAAGAAATGGATTTCATAAACCTGAGGAACTAAGAATTCCTGTTTCCCATGCCAGTGGAGAAAAAGGGGATGATCAATCTAATAAATCTTCGGTTACCTCCACAACATCTGTAGAAGGTGCAAGCACCAATAGACCCAAAGAACAGGTTATGCAGAATTGTCAGAGCTTTCCGTCACAGGTTCCCTACTTTCCTGGGACCCCTTGGCCCATCCCTTGGAATCCAGTGCAGTGGAGTTCTCCCGTACCACCGCCTGCTTTTTGTCCACCCGGATTTACCATGCCATTCTATCCTGCAACAGCTTATTGGGGTTGTGCTATGCCAGGCACGTGGAACATCCCATGGCTAGCGCAACCGTCATCACCAAATGGTGCAACACCTAACTCTGGCCCCAACTCCCCAACCTTGGGTAAACATTCAAGAGAAGACTACACATTCAAACCAAATGAGTCAGGTGGTGAGGATGGACACAGTAAAGAAAACAACAAAGAAAAGAGCCTGTGGGTTCCAAAAACTTTGAGGATTGATGACTCGGGAGAAGCGGCAAAAAGCTCTATATGGGCGACACTGGGGATTAAAAATGACAAGGCTGACTCAGTTCCTGGGGGAACACTCTTTAAAGCCTTCCCTTCAAAGCATGATGACAAAAACCATTCAATGCAATCCTCGCGGGTCTTGCTGGCCAATCCAGCAGCATTGTCTAGGTCACTTAACTTTCATGAGACCTCATAA 1512 0.4735 MSEAKDPAIKLFGKTIPVPEILPGSNGAPASSSGDVVVDDSVDASSTNSSRESHTNTDAQEKDFDKDTLGEKPTDDKKEDGAPAQSSEEVANPDTASGTCEESIIQSTEREATTLKTTKTEEEQGETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSVASHYRQITVSEAALQNPRTDLPNGAYHPSLKCNGTVLTFGTDTPLCESMASVLNLADKTMHNYTRNGFHKPEELRIPVSHASGEKGDDQSNKSSVTSTTSVEGASTNRPKEQVMQNCQSFPSQVPYFPGTPWPIPWNPVQWSSPVPPPAFCPPGFTMPFYPATAYWGCAMPGTWNIPWLAQPSSPNGATPNSGPNSPTLGKHSREDYTFKPNESGGEDGHSKENNKEKSLWVPKTLRIDDSGEAAKSSIWATLGIKNDKADSVPGGTLFKAFPSKHDDKNHSMQSSRVLLANPAALSRSLNFHETS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1948 503 MobiDBLite consensus disorder prediction 378 399 - -
Gso9g1948 503 MobiDBLite consensus disorder prediction 277 310 - -
Gso9g1948 503 MobiDBLite consensus disorder prediction 285 310 - -
Gso9g1948 503 Pfam Dof domain, zinc finger 139 196 IPR003851 GO:0003677|GO:0006355
Gso9g1948 503 MobiDBLite consensus disorder prediction 400 425 - -
Gso9g1948 503 MobiDBLite consensus disorder prediction 1 141 - -
Gso9g1948 503 MobiDBLite consensus disorder prediction 378 425 - -
Gso9g1948 503 MobiDBLite consensus disorder prediction 55 84 - -
Gso9g1948 503 ProSitePatterns Zinc finger Dof-type signature. 144 180 IPR003851 GO:0003677|GO:0006355
Gso9g1948 503 MobiDBLite consensus disorder prediction 114 140 - -
Gso9g1948 503 MobiDBLite consensus disorder prediction 26 54 - -
Gso9g1948 503 PANTHER CYCLIC DOF FACTOR 2 1 502 IPR045174 GO:0003700|GO:0006355
Gso9g1948 503 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 502 - -
Gso9g1948 503 MobiDBLite consensus disorder prediction 88 113 - -
Gso9g1948 503 ProSiteProfiles Zinc finger Dof-type profile. 142 196 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1948 Gso-Chr9 43806998 43810964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1948 6 503 C2C2-Dof Transcription Factor Family AT5G39660 46.272 2.31e-116 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso9g1948 zf-Dof 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1948 - - gmx:100784308 979.933