Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2288 ATGGCAACAGCACCAGCAACAAAAGACCAAGAACCCACACAAGGCCGAAAATTCACCACCACCACCACAACAACAACAACAACAACGAGACCAGCGCCAGAACAAGGTGTGAAGTGTCCACGATGCGATTCATCCAACACCAAGTTCTGTTACTACAACAACTACAGCCTCACCCAGCCTAGGCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAACGGCGGAGCGTTGCGCAACGTCCCGATTGGCGGCGGCTGCAGGAAGAACAAAAGGGTCGTTGTCAAACCCTCTTCCTCCTCCTCCTCCTCGTTATCTTCATCACCAAGATTCTCTAACGAATTCAGCCTTCGTGGCCTCAACGTTCCGCCCTCCGTCGAATTCAACCTCGGCGCGCTGCCCTTCCCTGCCTCCTCGAGGCTCAACATTCCGACAACCTTAAACACAGGGTTGTTCAGCAACCAGTTCTCGTCATCTCCGTTGTCTTTCGGAGGCGACGTTAACTCGGTCTCGGTCACTAACAATGCTTTGTCAGGCTTTCAGCTTGACGCGACTCCTGCAACTGTCCTGTCAAATTCCTTGATGAGCCTTGCGTCCAACAACAACACTCAGAATAATAATAATTTCTGGGCGCTGCAGGATCGGTCGCAAGGCTCGACACTATTACTGTCTGATTCATTCAACAGTAGTGCAATGCAGTCTATGCAGCAATCTCTGAACGTTCATAGCAGTCTTGCTTCTTCGATTGAGTCACTGAGCTGCGTCAACCAGGACTTGCATCTGAAGATGCAGCAGCAGCGTTACGCCACAATGATGTTCGGTGGGGACAGCTACCACCACAAAGGTGGTGGTGGTGGTGGTGGTGATGAAAACAACGGCGTTTCGTTTTCTCAAACGGCTAATAGGTTCGAGAATCAGAAGCAGTTGGTGGGGAACCCCGTTATGTTTCAGAACCTCGAGATTTCGAAGCCACCTGGCAGTTCCGTAACAGAAGATCCAAGTGGGGCTACAGTTACAACAACAGTAGCACCACCCACCGAATGGTTCTTTGGGAATTCTTCTTTTTCCTCAGCAGGTAATGGTAATGATGGTGCCAATAGCAACAACAACAACATTAACATCAACATTAACGATGCAAACAACAATTGGAGTGATGCCCTTGCTTGGGGAGATTTTCAGCAGCAGCAGCAGCAACAATACAGTGCTTTGCCCTAG 1212 0.5 MATAPATKDQEPTQGRKFTTTTTTTTTTTRPAPEQGVKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKRVVVKPSSSSSSSLSSSPRFSNEFSLRGLNVPPSVEFNLGALPFPASSRLNIPTTLNTGLFSNQFSSSPLSFGGDVNSVSVTNNALSGFQLDATPATVLSNSLMSLASNNNTQNNNNFWALQDRSQGSTLLLSDSFNSSAMQSMQQSLNVHSSLASSIESLSCVNQDLHLKMQQQRYATMMFGGDSYHHKGGGGGGGDENNGVSFSQTANRFENQKQLVGNPVMFQNLEISKPPGSSVTEDPSGATVTTTVAPPTEWFFGNSSFSSAGNGNDGANSNNNNINININDANNNWSDALAWGDFQQQQQQQYSALP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2288 403 Pfam Dof domain, zinc finger 36 91 IPR003851 GO:0003677|GO:0006355
Gso8g2288 403 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Gso8g2288 403 Coils Coil 361 381 - -
Gso8g2288 403 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Gso8g2288 403 MobiDBLite consensus disorder prediction 1 38 - -
Gso8g2288 403 MobiDBLite consensus disorder prediction 1 33 - -
Gso8g2288 403 PANTHER DOF ZINC FINGER PROTEIN DOF5.7 7 390 - -
Gso8g2288 403 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 390 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2288 Gso-Chr8 37192548 37193759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2288 34 403 C2C2-Dof Transcription Factor Family AT5G65590 35.215 5.89e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso8g2288 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2288 - - gmx:102660774 647.891