Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1963 ATGGCAAGAGCAGCTTGCAATCACCTTCACTTGGTTCCCAGTTTAGTTCATCCTCTAAAGTCAACCCTCTTCACAAATCACACTCTTTCCACCACACGCACTCGCTTCTATGGCATTCACCGAAGGTTCTCTTCTTCTTCATCCAAAATAAGCATGAGCCTCAAGGCTGGTATTGTTGGCCTTCCCAACGTTGGCAAGTCCACTCTCTTCAATGCCGTTGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTTCACGTGCTTTCTGATCTCAGCAAATCTCAACGAGCAGTTCCAGCATCAATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGAGAGGGTTTGGGCAATAAGTTTTTGTCTCATATTCGTGAGGTGGACTCTATACTTCAGGTTGTACGATGTTTTGAAGACAACGACATTGTTCATGTGAATGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAATTTGGAGCTTGTTTTCTCAGATTTGGACCAGATTGAAAAAAGAATTGATAAGCTAAAGAAAGGCAAGGCAAAGGATTCACAAAAGCTCAAGGAAGAGGCAGAAAAGTCTGCACTGGAAAAGATTCGTGAGGCGCTTATGGATGGAAAACCTGCGCGATCTGTTACCTTAACTGATTTTGAAAGGGATGCTGTAAAGCATCTCTGCTTGCTCACCATGAAACCTGTTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAACAATAATTATGTCAAGGACGTAACAAATGTTGTGTCTGAGTTGCAGTCCAGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAGTTGAAGAACGACAAGAATATTTGCAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGCAACCTAATAAGGGCAACATATGACCTTCTGGGTCTCAGAACTTACTTTACTTCTGGTGAGAAGGAGACAAAGGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCAGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGAGGATTTTGTTGCTGCTGGTTCACTTTCTGCAGCACGAGAGAAAGGACTGCCATCATTGCTACCCTTGCCCAATTTGGTTGACCCATTACTAACGCTGAAGACCATCGAGTTCTTGAACAATTGCAATACTATTGCCGATCACACCGTATCTCCATCGAAACCTAGCATGCCTCCACGACAAGCAAGTTATTGA 1338 0.4305 MARAACNHLHLVPSLVHPLKSTLFTNHTLSTTRTRFYGIHRRFSSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRIDKLKKGKAKDSQKLKEEAEKSALEKIREALMDGKPARSVTLTDFERDAVKHLCLLTMKPVIYVANVAESDLADPANNNYVKDVTNVVSELQSRIVTISAQVEAELTELPVEERQEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYEDFVAAGSLSAAREKGLPSLLPLPNLVDPLLTLKTIEFLNNCNTIADHTVSPSKPSMPPRQASY* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1963 445 PANTHER OBG GTPASE FAMILY 52 398 - -
Gso8g1963 445 Gene3D - 165 254 IPR023192 -
Gso8g1963 445 CDD YchF 56 334 IPR041706 -
Gso8g1963 445 Hamap Ribosome-binding ATPase YchF [ychF]. 53 420 IPR004396 GO:0005524|GO:0005525|GO:0016887
Gso8g1963 445 Gene3D - 100 398 IPR012675 -
Gso8g1963 445 TIGRFAM TIGR00092: GTP-binding protein YchF 52 398 IPR004396 GO:0005524|GO:0005525|GO:0016887
Gso8g1963 445 Gene3D - 54 335 IPR027417 -
Gso8g1963 445 Pfam Protein of unknown function (DUF933) 336 398 IPR013029 -
Gso8g1963 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 358 IPR027417 -
Gso8g1963 445 PANTHER OBG-LIKE ATPASE 1 52 398 - -
Gso8g1963 445 Pfam 50S ribosome-binding GTPase 56 168 IPR006073 GO:0005525
Gso8g1963 445 Coils Coil 189 209 - -
Gso8g1963 445 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 335 IPR031167 GO:0005525
Gso8g1963 445 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525
Gso8g1963 445 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525
Gso8g1963 445 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525
Gso8g1963 445 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1963 Gso-Chr8 20027831 20048088 Transposed