Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1958 ATGGCACGGTGCATATTGTCACATGTTTTGGCTTTTGCACTTGTTGCTGGGTTGTGTGTCTTCAGCTGCTTGGTTAACGTTGCACAAGCTCAATCTGCAAACGCCACCACTGATCCTTCCGAAGCAAGAGCTTTAAATTCAATCTTCAGCAAATGGGATATATTGGCAAACCCAACTCAATGGAATATTAGCAGTGAACTTTGTAGTGGAAGAGCTATCGATGCTACCACCACCATCGATGACACAACTTTCAACCCATTCATCAAATGTGATTGCTCCTATGACAATAGAACTACTTGTCGCATCACAGCATTAAAGGTTTATGCAATGAGCATAGTTGGTACAATTTCAGAAGAGTTATGGACTTTGACTTACCTCACCAATTTGGCTTTTGGGTCAAACAAGTTCAGAGGATCTCTTCCATCAGAACTTGGGAAACTGACAAATTTAGAGCAAATGAGATTTCAGGGAAATTCTTTTAATGGCTCAATACCATCATCATTTTCTAATTTGAGTTCTTTAACAGAATTGAGAATCACAGGTTTATCTAATGGGAGTTCCTCATTGGAATTTTTAAGGAATATGAAATCTTTGACTATCTTAGAACTGAGGAATAACAATATTTCTGGTTCGATTCCATCCACCATTGGAGAGTTACACAATTTGAAACAGTTGGATTTAAGCTTCAATAACATCACAGGACAAAATTTGGGATCAATTTTCAATTTGAGTTTGCTCACTTACTTGTTTCTTGGAAATAATAAATTCAATGGCACCCTTCCGATGCAGAAAAGTTCATCTCTTGTAAATATAGACTTGTCATACAATGATCTATCGGGTAGTCTCCCCTCTTGGGTAAACGAACCAAATTTACAACTGAATTTAGTTGCCAACAACTTAGATGTCTCAAATGCCAGTGGCTTGCCTATTGGGCTCAATTGTCTCCAAAAAAATTTTCCTTGCAATCAAGGAATTGGAAGATACTCTGACTTTGCAATCAAGTGTGGCGGTAACCAAATTAGGTCGGCAGATGGAATAGTGTATGAAATGGACAATCAAACACTTGGTCCTGCTACATACTTTGTTACTGATGCAAACAGATGGGCTGTTAGTAATGTTGGATTATTTACGGGGAGCAGTAATCCTGTATACAAAAGTTTTGTGTCTAATCAGTTCACTGGCACTGTGAATTCGGAGCTCTTCCAAACAGCACGACTTTCTGCTTCGTCATTAAGATATTATGGCCTGGGGCTGGAAAATGGTTTTTACAACATAACCCTTCAATTTGCAGAAACAGCTATTCTAGATTCTACTAGAAGTTGGGAAAGCCTTGGGAGGCGAGTCTTTGATATTTATATTCAGGGTACTCGTGTTTTGAAGGATTTTGATATACAGAAGGAAGCTGGGGGCATCTCATATAAAGCTATCCAAAGGCAATTTAGATTTGAAGTGACAGAAAACTATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATCCCAGATTTCATACCTACTGTTAGTAACAAACCTCCAAGTAGTAACAACAATAATATCGGTCTAATTCTTGGAATCGTACTTGGAGTTGGAGTTGTAAGCGTTTTATCAATTTTTGCAATTTTCTGTATCATTCGGAGAAGAAGACGTCGTGATGATGAAAAAGAGCTTCTAGGAATTGATACTAAGCCCTACACTTTCAGCTATTCTGAGTTAAAGAATGCTACAAATGATTTTAATCTTGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTCATTGCTGTGAAACAACTATCTGTGGGATCCCATCAAGGAAAGAGCCAATTCATAACTGAGATTGCTACTATATCAGCTGTGCAACATCGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTTTATGAATATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAAATGTTTAACCCTCAATTGGTCCACACGCTATGATATATGCTTGGGTGTTGCTAGAGGTTTAACTTATTTACATGAAGAGTCACGTCTTCGCATTGTACACCGTGATGTGAAAGCCAGTAATATTTTGCTTGATTATGAGCTTATTCCGAAAATATCTGACTTTGGTTTGGCCAAATTATATGATGATAAAAAGACCCATATAAGTACCGGTGTGGCGGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGCCACCTTACAGAGAAAGCAGATGTATTTTCCTTTGGTGTCGTGGCTTTAGAGTTAGTTAGTGGAAGGCCAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGGGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGACTTTCAGAATTCAACGAGGAAGAAGTAAAACGTGTTGTAGGAATAGCACTTTTGTGCACTCAGACATCACCAACATTACGACCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTAAGCACTGTAACTTCAAAGCCCGGATACCTATCTGACTGGAAATTTGAGGATGTGAGCAGCTTCATGACTGGCATTGAAATCAAAGGATCAGATACAAATTACCAGAATTCATCCGGAAGTACCAGCATGATGGGTGGTGTAGACTATTATTCACCAAGAGATGTTTCTAAACCGATCCTTAAGGAGACTCTTTGGGAGGGTAGGTGA 2817 0.3894 MARCILSHVLAFALVAGLCVFSCLVNVAQAQSANATTDPSEARALNSIFSKWDILANPTQWNISSELCSGRAIDATTTIDDTTFNPFIKCDCSYDNRTTCRITALKVYAMSIVGTISEELWTLTYLTNLAFGSNKFRGSLPSELGKLTNLEQMRFQGNSFNGSIPSSFSNLSSLTELRITGLSNGSSSLEFLRNMKSLTILELRNNNISGSIPSTIGELHNLKQLDLSFNNITGQNLGSIFNLSLLTYLFLGNNKFNGTLPMQKSSSLVNIDLSYNDLSGSLPSWVNEPNLQLNLVANNLDVSNASGLPIGLNCLQKNFPCNQGIGRYSDFAIKCGGNQIRSADGIVYEMDNQTLGPATYFVTDANRWAVSNVGLFTGSSNPVYKSFVSNQFTGTVNSELFQTARLSASSLRYYGLGLENGFYNITLQFAETAILDSTRSWESLGRRVFDIYIQGTRVLKDFDIQKEAGGISYKAIQRQFRFEVTENYLEIHLFWAGKGTCCIPTQGTYGPLIQAIHAIPDFIPTVSNKPPSSNNNNIGLILGIVLGVGVVSVLSIFAIFCIIRRRRRRDDEKELLGIDTKPYTFSYSELKNATNDFNLENKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGKCLTLNWSTRYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDYELIPKISDFGLAKLYDDKKTHISTGVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKVYLLEWAWQLHEKNCIIDLVDDRLSEFNEEEVKRVVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSTVTSKPGYLSDWKFEDVSSFMTGIEIKGSDTNYQNSSGSTSMMGGVDYYSPRDVSKPILKETLWEGR* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1958 938 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Gso8g1958 938 SMART serkin_6 597 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1958 938 Gene3D Ribonuclease Inhibitor 39 325 IPR032675 -
Gso8g1958 938 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 179 923 - -
Gso8g1958 938 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 84 175 - -
Gso8g1958 938 Gene3D Phosphorylase Kinase; domain 1 559 672 - -
Gso8g1958 938 SUPERFAMILY L domain-like 77 299 - -
Gso8g1958 938 Gene3D Transferase(Phosphotransferase) domain 1 673 876 - -
Gso8g1958 938 Pfam Protein tyrosine and serine/threonine kinase 598 864 IPR001245 GO:0004672|GO:0006468
Gso8g1958 938 ProSiteProfiles Leucine-rich repeat profile. 221 244 IPR001611 GO:0005515
Gso8g1958 938 SUPERFAMILY Protein kinase-like (PK-like) 580 883 IPR011009 -
Gso8g1958 938 ProSiteProfiles Protein kinase domain profile. 597 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1958 938 Pfam Malectin domain 330 516 IPR021720 -
Gso8g1958 938 Gene3D - 330 520 - -
Gso8g1958 938 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 179 923 - -
Gso8g1958 938 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 84 175 - -
Gso8g1958 938 CDD STKc_IRAK 603 864 - -
Gso8g1958 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 716 728 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1958 Gso-Chr8 19918656 19936849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1958 111 938 Receptor kinase-like Gene Family AT1G56120 59.024 0.0 1023
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso8g1958 PK_Tyr_Ser-Thr 2.1e-47 CL0016