Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1957 ATGGCACGGTGCATATTGTCACATGTTTTGGCTTTTGCACTTGTTGCTGCGTTGAGCTTGGTTAACGTTGCACAATCTCAATCTGCAAACGCCACCACTGATCCTTCCGAAGCAAGAGCTTTAAATTCAATCTTTAAGAAATGGGATATATTGGCAAACCCAACTCATTGGAATATTAGCGGTGAACTTTGTACTGGAAGAGCCATCGACACTTCCCTCATTGATGATACAACCTTCAACCCATTGATCAAATGTGATTGTTCCTATGACAATAGAACTACTTGTCGCATCACAGCATTAAAAGTTTATGCAATGAGCGTAGTTGGTACAATTCCAGAAGAGTTATGGACTTTGACTTACCTCACCAATTTAAATCTTGGCCAAAATTACTTGACAGGTTCTCTACCTCCAAGCATTGAAAATCTAACTCGTTTGCAATACTTGAGCCTTGGCATCAATAATATTTCTGGAGAGCTTCCAAAGGAATTGGGAAATCTTACAGAGTTAAAATTATTGGCTTTTGGATCAAACAAGTTTAGAGGATCTCTTCCATCTGAACTTGGAAAATTGACAAATTTAGAAGAAATATGGGCTTCAGACACGGAACTCACAGGAAAAATACCAGACTTCATAGGGAATTGGTCTAAGCTTCAATCCTTGAGATTTCAGGGCAATTCTTTTAATGGCTCAATACCATCATCATTTTCTAATTTGAGTTCTTTAACAGAATTGAGAATCACAGGTTTATCTAATGGGAGTTCCTCATTGGAATTTTTAAGGAATATGAAATCTTTGACTATCTTAGAACTAAAGAATAACAATATTTCTGGTTTGATTCCATCCACCATTGGAGAGTTACACAATTTGAATCAATTGGATTTAAGCTTCAATAACATCACAGGACAAAATTTGGGATCAATTTTCAATTTGAGCTCACTCTCTTTCTTGTTTCTTAGAAATAATAAATTCAACGGTACCCTTCCGATGCAGAAAAGTCCATCTCTTGTAAATATAGACTTGTCATACAATGATCTATCGGGTAGCCTCCCCCCTTGGGTAAACGAACCAAATTTACAATTGAATTTAGTTGCCAACAACTTAGATGTCTCAAATGCCGGTGGCTTGCCTATTGGGCTCAATTGTCTCCAAAAAAAATTTCCTTGCAATCAAGGAGTTGGAAGATACTCTGACTTTGCAATCAAGGGTGGTGGTAACCAAATTAGGTCGGCAGATGGAATAGTGTATGAAATGGACAATCAAACACTTGGTCCTGCTACATACTTTGTTACTGATGCAAACAGATGGGCTGTTAGTAATGTTGGATTATTTGCGGGGAGCAGTAATCCTGTATACAAAAGTTTTGTGCCTAATCAGTTCGCTGGCACTGTGAATCCGGAGCTCTTCCAAACAGCACGACTTTCTGCTTCGTCATTAAGATATTATGGCCTGGGGCTGGAAAATGGTTTTTACAACATAACCCTTCAATTTGCAGAAACAGCTATTCTAGATTCTAATAGAACCTGGGAAAGCCTTGGGAGGCGAGTCTTTGATATTTATATTCAGGGTACTCGTGTTTTGAAGGATTTTGATATACAGAAGGAAGCTGGGGGCATCTCATATAGAGCTATCCAAAGGCAATTTAGATTTGAAGTGACAGAAAACTATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATTCCAGATTTCATACCTACTGTTAGTAACAAACCTCCAAGTAGTAGCAACAATAATATCGGTCTAATTCTTGGAATCGTATTTGGAGTTGGAGTTGTAAGCGTTTTATCAATTTTTGCAATTTTCTATATCATTCGGAGAAGAAGACGTCGTGATGATGAAAAAGAGCTTCTAGGAATTGATACTAAGCCCTACACTTTCAGCTATTCTGAGTTAAAGAATGCTACAAATGACTTTAATCATGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAACGATGGAAGGGCTATTGCTGTGAAACAACTATCTGTGGGATCCCATCAAGGAAAGAGCCAATTCATAACTGAGATTGCTACTATATCAGCTGTGCAACATCGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAAATGTTTAACCCTCAATTGGTCCACACGCTATGATATATGCTTGGGTGTTGCTAGAGGTTTAACTTATTTACATGAAGAGTCACGTCTTCGCATTGTACACCGTGATGTGAAAGCTAGTAATATTTTGCTTGATTATGAGCTTATTCCAAAAATATCTGACTTTGGTTTGGCCAAATTATATGATGATAAAAAAACCCATATAAGTACCGGTGTGGCGGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGCCTCCTTACAGAGAAAGCAGATGTATTTTCCTTTGGTGTTGTGGCTCTAGAGTTAGTTAGTGGGAGGCCAAATTCTGATTCAAGTTTGGAAGGAGAGAAGGTGTATCTTCTAGAATGGGCTTGGCAACTTCATGAAAAAAATTGCATAATTGATCTGGTGGATGATAGACTTTCAGAATTCAACGAGGAAGAAGTAAAACGTATTGTAGGAATAGGACTTTTGTGCACTCAGACATCACCAACATTACGACCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTAGGCACTGTACCTTCAAAGCCTGGATACCTATCTGACTGGAAATTTGAGGATGTGAGCAGCTTCATGACTGGCATTGAAATCAAAGGATCAGATACAAGTTACCAGAATTCATCAGGAAGTACAAGCATGATGGGTGGTGTAGACTATTATCCACCAAGAGATGTTTCTAAACCGATCCTTAAGGAGGCTCTTAGGGAGGGTAGATGA 3018 0.388 MARCILSHVLAFALVAALSLVNVAQSQSANATTDPSEARALNSIFKKWDILANPTHWNISGELCTGRAIDTSLIDDTTFNPLIKCDCSYDNRTTCRITALKVYAMSVVGTIPEELWTLTYLTNLNLGQNYLTGSLPPSIENLTRLQYLSLGINNISGELPKELGNLTELKLLAFGSNKFRGSLPSELGKLTNLEEIWASDTELTGKIPDFIGNWSKLQSLRFQGNSFNGSIPSSFSNLSSLTELRITGLSNGSSSLEFLRNMKSLTILELKNNNISGLIPSTIGELHNLNQLDLSFNNITGQNLGSIFNLSSLSFLFLRNNKFNGTLPMQKSPSLVNIDLSYNDLSGSLPPWVNEPNLQLNLVANNLDVSNAGGLPIGLNCLQKKFPCNQGVGRYSDFAIKGGGNQIRSADGIVYEMDNQTLGPATYFVTDANRWAVSNVGLFAGSSNPVYKSFVPNQFAGTVNPELFQTARLSASSLRYYGLGLENGFYNITLQFAETAILDSNRTWESLGRRVFDIYIQGTRVLKDFDIQKEAGGISYRAIQRQFRFEVTENYLEIHLFWAGKGTCCIPTQGTYGPLIQAIHAIPDFIPTVSNKPPSSSNNNIGLILGIVFGVGVVSVLSIFAIFYIIRRRRRRDDEKELLGIDTKPYTFSYSELKNATNDFNHENKLGEGGFGPVYKGTLNDGRAIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGKCLTLNWSTRYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDYELIPKISDFGLAKLYDDKKTHISTGVAGTIGYLAPEYAMRGLLTEKADVFSFGVVALELVSGRPNSDSSLEGEKVYLLEWAWQLHEKNCIIDLVDDRLSEFNEEEVKRIVGIGLLCTQTSPTLRPSMSRVVAMLSGDIEVGTVPSKPGYLSDWKFEDVSSFMTGIEIKGSDTSYQNSSGSTSMMGGVDYYPPRDVSKPILKEALREGR* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1957 1005 Gene3D Ribonuclease Inhibitor 54 163 IPR032675 -
Gso8g1957 1005 Gene3D Transferase(Phosphotransferase) domain 1 740 938 - -
Gso8g1957 1005 SUPERFAMILY L domain-like 80 371 - -
Gso8g1957 1005 SMART serkin_6 664 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1957 1005 SUPERFAMILY Protein kinase-like (PK-like) 647 952 IPR011009 -
Gso8g1957 1005 ProSiteProfiles Protein kinase domain profile. 664 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1957 1005 Pfam Malectin domain 397 583 IPR021720 -
Gso8g1957 1005 Pfam Protein tyrosine and serine/threonine kinase 666 931 IPR001245 GO:0004672|GO:0006468
Gso8g1957 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Gso8g1957 1005 Gene3D - 398 587 - -
Gso8g1957 1005 Gene3D Phosphorylase Kinase; domain 1 627 739 - -
Gso8g1957 1005 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 135 196 - -
Gso8g1957 1005 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 189 990 - -
Gso8g1957 1005 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 189 990 - -
Gso8g1957 1005 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 135 196 - -
Gso8g1957 1005 CDD STKc_IRAK 670 931 - -
Gso8g1957 1005 Pfam Leucine rich repeat 264 323 IPR001611 GO:0005515
Gso8g1957 1005 Gene3D Ribonuclease Inhibitor 164 253 IPR032675 -
Gso8g1957 1005 Gene3D Ribonuclease Inhibitor 254 390 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1957 Gso-Chr8 19870284 19887997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1957 102 304 Receptor kinase-like Gene Family AT1G56120 30.392 5.10e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso8g1957 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1957 8 19870284 19887997 Gso12g1960 12 43595468 43608079 PCT