Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1946 ATGCCTGCTTATGGGGTAAACATGAATGAGATGAATCTAAATTGTGTCCTTATGATCATATTGATGATTATATTACCCATCCTAGGGTTGCTTTTGTGGCTAGAAAATAAGTTATCCAATAATTTCTGTGAGAGCAATCATTACTCCAAATGGAAGGAACTAGTTCAGATCAATGATGAAATAAACAGCCTACTCTTTGGACAAGATGGGAACACTAGTAGTGCACACTGTGCTTGCTCCTTCTGTGGCCGATTAAGCGACATAGTCACAAGATGTTCATGCTGCAACACTGCTATATATTGTTCAAATGCATGCCATGTTATGCACTGGAGGTTTTGCCATAAATATGAATGTGTCGAGATAGAAATGTCAGAAGATCTGCTGGAATCACCTTCTCATAGAACCCATTGCCTTCTCATGGAGCCTGAAAACGATAAGTACTCATTCAATCAACTTGATGAGCAGAAAATATATGAGGGAGATGCTTACTACATTGAAGGAGGAGAAGAGCAAAATAGTGTTGAGTTGAGTGATGAAACAGCAATGCCTCGACATGGCAATATTAACGGTATCAATGGCTGTGTTGTGTGTGGTAATCCAAGCTGTAAAGCATGCTCAAGGTGCATAGTTATAAAATCTTGCTCACGAACATGCCAGCATTTTGATTGGAGATCAGGGCATAGGTTTCAATGTCTTGTTGAGAAGGAAAATTCATCTGAAGCAGCATTGGTCAATCAAGCAAGACCTGCTTATGGAAATGTAATTTTTCATTGCCTGGTTGAAAATCATAAAAACTCAAATGAGGTGGAAGATAATGCTCATTTATCTATTCCTCTTTGCTTGGAATTTCTCTCAGGAAACACCAACTCTAGGGCCTTGAATTCAAGTTCTCTGTCTCAGGACGCAACCAATAATGCCCGGGAGGTTGAAGATCAATTGAGAAGCCTAAAAAAAGAATTGGCAAAGATTAAAGATGAGAACATAACACTACGGTCAGAGTGCGACGAATGGGGGGCACGAGCAAGGAATTCTATCGATAGACTTTACAGCTTCAAGAAAGAAAATGAACACCAGTTGTTTATTTTGAAGCAAGAAAATGAATTGATATCAAATGCTGAGAAGCAAGCTTGTCAAATGATTAATAGTTTATCTCAGAGGCTACACTGCTTGCAGATTGCAGTGGAAAGTGGAGTTGAAGAGAGGCAAAAACAAGAAGAATATGTACATATGCTACAGAATGAATGTACTAAGGCTAAGATAGAGCTACAAGAACAGAACAAGTGCATCCAGAGGCTCGCACTGGAGCTTGATAAGACCACTCAATTTGTTGGTTGTTCAATTTGTCTAACCAATGAGAAGAACATGACCTTTGGTTGTGGACACATGACTTGTTTAGAGTGTGGATCAAAAATTCACAAGTGTCATATATGTCGAAGGAAGATCACCATCCGTATAAGGTTGTTTTCTGATTAA 1473 0.3904 MPAYGVNMNEMNLNCVLMIILMIILPILGLLLWLENKLSNNFCESNHYSKWKELVQINDEINSLLFGQDGNTSSAHCACSFCGRLSDIVTRCSCCNTAIYCSNACHVMHWRFCHKYECVEIEMSEDLLESPSHRTHCLLMEPENDKYSFNQLDEQKIYEGDAYYIEGGEEQNSVELSDETAMPRHGNINGINGCVVCGNPSCKACSRCIVIKSCSRTCQHFDWRSGHRFQCLVEKENSSEAALVNQARPAYGNVIFHCLVENHKNSNEVEDNAHLSIPLCLEFLSGNTNSRALNSSSLSQDATNNAREVEDQLRSLKKELAKIKDENITLRSECDEWGARARNSIDRLYSFKKENEHQLFILKQENELISNAEKQACQMINSLSQRLHCLQIAVESGVEERQKQEEYVHMLQNECTKAKIELQEQNKCIQRLALELDKTTQFVGCSICLTNEKNMTFGCGHMTCLECGSKIHKCHICRRKITIRIRLFSD* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1946 490 Coils Coil 299 333 - -
Gso8g1946 490 ProSiteProfiles Zinc finger MYND-type profile. 194 231 IPR002893 -
Gso8g1946 490 Pfam Zinc finger, C3HC4 type (RING finger) 445 482 - -
Gso8g1946 490 ProSiteProfiles Zinc finger MYND-type profile. 79 118 IPR002893 -
Gso8g1946 490 SUPERFAMILY HIT/MYND zinc finger-like 76 120 - -
Gso8g1946 490 PANTHER - 209 437 - -
Gso8g1946 490 PANTHER - 444 479 - -
Gso8g1946 490 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIB2 209 437 - -
Gso8g1946 490 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIB2 444 479 - -
Gso8g1946 490 Gene3D - 186 236 - -
Gso8g1946 490 Gene3D - 66 123 - -
Gso8g1946 490 ProSiteProfiles Zinc finger RING-type profile. 445 478 IPR001841 -
Gso8g1946 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 489 IPR013083 -
Gso8g1946 490 SUPERFAMILY HIT/MYND zinc finger-like 191 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1946 Gso-Chr8 19624449 19634108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1946 194 231 Miscellaneous Gene Families AT4G31670 55.263 2.39e-06 48.1