Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1928 ATGTCATTTTCCCATAGCCAAAATTTTTTCAAGAGGTTCTGTGTGGATGAATTCCAAATGGGAAGTCTTCCATATAGCAGCTTTTTGTCCAATGATCTCTTGCCATCCCTTGGAGCCAGAATCAACCAAGAAACGAGGCTTAGAAGATACATAATTTCCCCTTTCAATCCACGTTATAGGGCATGGGAGATGATATTAATTGTTCTAGTTGTTTACTCTGCATGGATTTGCCCTTTTGAGTTTGCCTTTCTGCCTTATAAGCAAGACACACTATTCATCATAGACAACATTGTCAATGCCTTCTTTGCCATTGACATCATGCTGACATTCTTTGTTGCATATCTTGATAACCATTCCTACCTTCTTGTTGATGATCCCAAGAAAATTGCAATAAGGTACATATCTACCTGGTTTATATTTGATGTCTGCTCAACTGCGCCATTTCAATCCATCAGCCTCCTCTTCACTAATCACAGAAGTGAGATTGGCTTCAAAGTTCTCAACATGCTTCGGTTGTGGCGCCTCAGACGTGTCAGTTCTCTGTTTGCAAGACTTGAGAAGGACATTCGCTTCAATTACTTCTGGACTAGGTGCTCCAAGCTCATTGCTGTAACTTTGTTTGCTGTGCACTGTGCTGGATGCTTCAACTATCTGATTGCAGATAGGTACCCTGATGCAAAATCAACATGGATTGGTTCTGTGTACCCAAATTTCAAAGAAATGAGTCTTTGGGACAGATATGTCACTGCCATGTATTGGTCCATTGTCACACTTACCACCACTGGCTATGGGGACTTGCATGCTGAAAACACAAGAGAGATGCTGTTTGACATATTCTACATGTTGTTCAACTTGGGATTAACCTCATACATCATTGGAAACATGACAAACCTGGTGGTCCACTGGACTAGCCGCACCAGAAATTTTAGAGACACAGTAAGAGCAGCTTCAGAATTTGCATCAAGAAATCATCTGCCTCATCACATACAGGATCAAATGTTGTCACACTTGTGTTTGAAATTCAAGACAGAGGGACTGAAGCAGCAAGAAACACTAAATGGCATGCCAAAGGCAATTCGTGCAAGCATTGCATACCATCTATTTTTCCCAGTTGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCTCATGACTTTCTTTTCCAACTGGTTACTGAGATGGAAGCTGAGTATTTCCCACCCAAGGAAGATGTTATACTACAAAATGAGTCTCCCACAGACCTTTACATGCTGGTTTCAGGGGCAGTGGATCTCATTCGCTATGTCAATGGCCATGATCAAGTTCTGAAGAAGGCTATTGCAGGAGACACAATTGGGGAGATTGGAGTGTTGTATTGTAGACCACAGCCCTTCACTGTTCGGACCACTGAGCTTTCTCAAATTTTAAGACTCAGCAGAACTTCCTTAATGAATTCCTTACATGCATATCCAGAAGCAGCACAAATTATAATGAAAAATATCTTCATGAGCATAAAGAGGCATGAAGGATTGGATTTTGAATATCCACCTAGGGACCCTGGAATGCCTCATTACCAAATGCATGATTGGGACAACACTGGAGGAAGATTTTCTGATGCATCTACAAATAACTCACATGGGGAAGCCAGATTGCATAACTTGATTCCTGAGGATGGCAAAAGAGATCCTCATGATACTGTGCACAATGATCATCCTGACATGGAAGCAAATGAAAAGAACCAAAGCCCTATAAGATGGAAACAGAAGCCTCTTGTAGACCAGCAACAAAACAAGAGCATTTCTGACCTTGCAATGAACTATGAAAATAGGAAAACATTAGATGAACATATTATAGAATTTTTGGAGCCAGAAATCCCTATCAACTACCCTTTAGGAAAAGTATACACAAACTCTTATTCAAGTACCTCTAACCATAGAAATGAGAGAGAAACAGAAAGATACTTCAAAAAGAGAGTTATCATCCACTTTCTAAGCAAGGAAAGAACAACCTCACAGGAACAGCATGGGAAGTTGATAATCCTACCTGATTCAATAGAAGAGTTGCTCCATACTGCGGGAGAAAAGTTTGGAGACACCAAGCCAACAAAAGTAATTAGTACAGAGAATGCGGAGATAGATGATATTAGTGTCATTAGAGATGGGGATCATCTTTTTTTTCTTTGCAGTGACAGTGAAAATTTGAGTTCATAA 2187 0.4051 MSFSHSQNFFKRFCVDEFQMGSLPYSSFLSNDLLPSLGARINQETRLRRYIISPFNPRYRAWEMILIVLVVYSAWICPFEFAFLPYKQDTLFIIDNIVNAFFAIDIMLTFFVAYLDNHSYLLVDDPKKIAIRYISTWFIFDVCSTAPFQSISLLFTNHRSEIGFKVLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCSKLIAVTLFAVHCAGCFNYLIADRYPDAKSTWIGSVYPNFKEMSLWDRYVTAMYWSIVTLTTTGYGDLHAENTREMLFDIFYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQDQMLSHLCLKFKTEGLKQQETLNGMPKAIRASIAYHLFFPVVQKVYLFQGVSHDFLFQLVTEMEAEYFPPKEDVILQNESPTDLYMLVSGAVDLIRYVNGHDQVLKKAIAGDTIGEIGVLYCRPQPFTVRTTELSQILRLSRTSLMNSLHAYPEAAQIIMKNIFMSIKRHEGLDFEYPPRDPGMPHYQMHDWDNTGGRFSDASTNNSHGEARLHNLIPEDGKRDPHDTVHNDHPDMEANEKNQSPIRWKQKPLVDQQQNKSISDLAMNYENRKTLDEHIIEFLEPEIPINYPLGKVYTNSYSSTSNHRNERETERYFKKRVIIHFLSKERTTSQEQHGKLIILPDSIEELLHTAGEKFGDTKPTKVISTENAEIDDISVIRDGDHLFFLCSDSENLSS* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1928 728 Gene3D Jelly Rolls 344 506 IPR014710 -
Gso8g1928 728 CDD CAP_ED 377 490 IPR000595 -
Gso8g1928 728 Pfam KHA, dimerisation domain of potassium ion channel 649 718 IPR021789 -
Gso8g1928 728 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Gso8g1928 728 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1928 728 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1928 728 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1928 728 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1928 728 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1928 728 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso8g1928 728 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 544 - -
Gso8g1928 728 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 544 728 - -
Gso8g1928 728 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso8g1928 728 PANTHER POTASSIUM CHANNEL AKT1 544 728 IPR045319 GO:0005249|GO:0006813
Gso8g1928 728 PANTHER POTASSIUM CHANNEL AKT1 1 544 IPR045319 GO:0005249|GO:0006813
Gso8g1928 728 Pfam Cyclic nucleotide-binding domain 397 477 IPR000595 -
Gso8g1928 728 ProSiteProfiles KHA domain profile. 650 728 IPR021789 -
Gso8g1928 728 Gene3D - 60 300 - -
Gso8g1928 728 SMART cnmp_10 377 494 IPR000595 -
Gso8g1928 728 SUPERFAMILY cAMP-binding domain-like 304 493 IPR018490 -
Gso8g1928 728 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1928 Gso-Chr8 19146315 19153518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1928 1 718 Ion Channels AT5G46240 61.073 0.0 900