Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1905 ATGCGCAATTCAAAGTTGTGTGCAGCGTCTCTTCTTATAGCACGGGCCAAGTCCCTCCAACTTCACCACCGCCACGTGCGTCACTGCTTCCCTCCATTTTCTTCTTCTTCTGCAACCTCAATCTCACTCTTCAGGTTTCATCACCCTTGGCTCTCTTCCTTGTGCAACGCGAAATCACTCATCACCACGCGCCTCTTCTCCAGCTACTACTCCCTCGAACAGTTCTCCGATGACGAATACGACTGCGACTTCGAGAATCAACAGGCATCGTCTACAGTGGCTAATGTGGATGAGTGGAAATGGAAACTCAGCATGTTGTTGCGCAGTGAAAAGGATCAGGAGATTGTATCTAGAGACAGAAAAGATAGGAGGGACTATGAACAGATAGCTAACCTTGCCAAAAGAATGGGGCTTTACAGTGAGTTGTTTGGAAAAGTGGTTGTTGCAAGCAAGGTGCCTCTTCCTAACTACCGTCCAGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGATTCCACTAAGCTTGCAAAGGAGGGTTGAGGGTTTGTTGCAGGAATACCTTGATAGGCTTCAGTTGAATTCTGCAAAGACAACTGACAGCCTAGATGATGTGAATTCCACCAATCAAGTTAAAGATATAAACATGGATGAAAATGCTGATTCTTTTGTGGATGAATCTGTTATGGAAAAGGTTCTCCAGAAGAGGAGTTTGAGGATGCGTAATATGCAAAGAGCTTGGCAGGAATCACCCGAGGGCAGGAAGTTGCTGGAATTCCGGAAGTCTCTACCATCATTCAAGGAGAAGCAAGGTTTACTTCAAGCTATAGCACATAATCAGGTGATAGTTATATCTGGAGAGACTGGCTGTGGTAAAACCACTCAACTTCCTCACTATGTATTAGAATCAGAGGTTGAGTCTGGTCGTGGAGCATTTTGTAGCATTATTTGCACACAGCCTCGAAGGATCTCTGCTATGGCAGTGGCAGAGAGAGTGTCAGCTGAGCGAGGAGAGCCTCTTGGTGAAACAGTTGGCTTCAAAGTTCGATTAGAAGGAATGAAAGGAAAAAACACCCATCTGCTATTTTGTACCAGTGGTATATTACTTAGAAGGCTGTTGAGTGATCGAAACCTGAATGGTATAACCCATGTTTTTGTGGATGAAATTCATGAAAGAGGCATGAATGAAGACTTCTTACTGATTGTGTTAAAGGATCTGCTTCCACGTCGTCGGGATTTAAGATTGGTTTTAATGAGTGCCACCTTGAATGCTGAGCTTTTTTCGAATTATTTTGGAGGTGCTCCTACATTTCATATTCCGGGTTTCACTTATCCAGTTAGAGCACACTTTTTAGAAGATATTTTGGAAATGACGGGATATAAATTGACTTCCTTCAACCAAATTGATGATTACGGTCAAGAGAAACTGTGGAAGACACAAAAGCAACTAGCACCACGGAAGAGGAAAAACCAGATCACTGCTCTTGTTGAGGATGCTCTTTCTAATTCAAGCTTTGAGAACTATAGCTCCAGGGCACGTGATTCACTAACATCTTGGGCACCTGACTGCATTGGTTTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCAGGTGCTGTCTTAGTATTTATGACTGGGTGGGAGGATATAAGCTCTTTAAAAGATCAGCTTAAAGCACATCCTCTTGTAGGAGATCCCAATAGGGTTCTGCTTCTAACATGTCATGGTTCAATGGCAACTTCAGAACAGAAACTCATATTTGAGAAACCACCTCCAAATATAAGGAAAGTGATACTTGCTACAAATATGGCTGAGGCAAGTATTACAATCAATGACATAGTTTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTAAATAACACGCCATGTCTTCTACCTTCTTGGATATCACAAGCATCTGCACGTCAGAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGTTACCACCTTTACCCAAAATGTGTTTATGATGCCTTTTCTGAATATCAACTTCCTGAACTACTGAGAACACCTTTGAATTCTCTATGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGGGTTCTTATCAGCAGCTTTACAGGCACCAGAGCCACGGGCTGTTCAAAATGCTATTGATTTTCTCAAGATGATTGGAGCATTAGATGAACAAGAAAATCTTACGAATCTTGGGAAGTTTCTCTCTATGCTTCCTGTTGATCCCAAGCTTGGAAAAATGTTAATAATGGGAGCTATATTTCGATGCTTTGATCCTGTTCTTACAATAGTTGCTGGCCTTAGTGTCAGGGATCCTTTTCTTTTGCCCCAAGACAAGAGGGATTTAGCAGGGACAGCGAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGGTCGGCTTACGAGTACTGCTGGAGGAATTTTCTATCAGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAACAGTTTAGCTTTATCTTGAAAGAAGCTGGCTTGGTAGATGCAGAAGCTAACGTCATTAACAAATTGAGTCACAATCAATCTCTTGTGCGTGCAGTCATATGTTCTGGGCTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGATGATGGCCAGGTTTTATTGTATGCTAATTCAGTGAATGCACGTTACCAGACCATTCCTTACCCTTGGTTGGTTTTTGGTGAGAAAGTCAAGGTCAATGCTGTTTTTATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATCCTTTTTGGTGGTGCTCTAAGTAATGGGATACAGGCTGGGCATCTGAAAATGTTAGATGGGTATGTTGACTTCTTCATGGATCCTAATTTAGCTGACAGCTTTTTGAAGCTTAAGGAAGAGCTCCATAAGCTTATCCAAAAGAAGCTGGAAGATCCTAGCATTGACATTCACAAGGAAGGGAAATACTTGATGCTTGCTGTTCAGGAGCTGGTTTCAGGGGATCAATGCGAAGGAAGATTTGTATTTGGCCGTGAAAGCCGGAAGCCTAAGGCCTCCAATGATGAAAACAAATTCACAAAAGATGGAACAAATCCCAAGAGCTTGCTGCAGACTCTGTTGATGCGAGCAGGGCACTCCCCACCCAAATACAAAACGAAACATCTTAAGACAAATGAGTTTAGGGCATTGGTGGAGTTTAAGGGAATGCAATTTGTTGGCAAACCAAAGAGAAACAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACCTCTGACAATAACCAGCATGAAGATGATAAGTCTCCTCCTGATGTAACTGACAACATGCTAAAACTCCTAGGGAAGCGTAGAAAATCAAAGCGAGGCCATGGTTGA 3486 0.4274 MRNSKLCAASLLIARAKSLQLHHRHVRHCFPPFSSSSATSISLFRFHHPWLSSLCNAKSLITTRLFSSYYSLEQFSDDEYDCDFENQQASSTVANVDEWKWKLSMLLRSEKDQEIVSRDRKDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSAKTTDSLDDVNSTNQVKDINMDENADSFVDESVMEKVLQKRSLRMRNMQRAWQESPEGRKLLEFRKSLPSFKEKQGLLQAIAHNQVIVISGETGCGKTTQLPHYVLESEVESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDILEMTGYKLTSFNQIDDYGQEKLWKTQKQLAPRKRKNQITALVEDALSNSSFENYSSRARDSLTSWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLKDQLKAHPLVGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYDAFSEYQLPELLRTPLNSLCLQIKSLQVESIGGFLSAALQAPEPRAVQNAIDFLKMIGALDEQENLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDAEANVINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFMDPNLADSFLKLKEELHKLIQKKLEDPSIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPPDVTDNMLKLLGKRRKSKRGHG* 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1905 1161 CDD DEXHc_RHA-like 279 439 - -
Gso8g1905 1161 SMART DRBM_3 1062 1125 IPR014720 -
Gso8g1905 1161 Gene3D - 705 806 - -
Gso8g1905 1161 PANTHER ATP-DEPENDENT RNA HELICASE 72 1055 - -
Gso8g1905 1161 MobiDBLite consensus disorder prediction 1042 1058 - -
Gso8g1905 1161 Pfam Helicase associated domain (HA2) 725 811 IPR007502 GO:0004386
Gso8g1905 1161 SUPERFAMILY dsRNA-binding domain-like 1055 1136 - -
Gso8g1905 1161 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 72 1055 - -
Gso8g1905 1161 SMART ha2_5 724 815 IPR007502 GO:0004386
Gso8g1905 1161 MobiDBLite consensus disorder prediction 1126 1161 - -
Gso8g1905 1161 Gene3D - 1041 1129 - -
Gso8g1905 1161 Pfam Helicase conserved C-terminal domain 531 661 IPR001650 -
Gso8g1905 1161 Gene3D - 211 441 IPR027417 -
Gso8g1905 1161 MobiDBLite consensus disorder prediction 1042 1061 - -
Gso8g1905 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 830 IPR027417 -
Gso8g1905 1161 SMART ultradead3 261 454 IPR014001 -
Gso8g1905 1161 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 440 IPR014001 -
Gso8g1905 1161 Pfam DEAD/DEAH box helicase 273 424 IPR011545 GO:0003676|GO:0005524
Gso8g1905 1161 MobiDBLite consensus disorder prediction 1129 1150 - -
Gso8g1905 1161 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 528 702 IPR001650 -
Gso8g1905 1161 Gene3D - 525 680 IPR027417 -
Gso8g1905 1161 Pfam Double-stranded RNA binding motif 1062 1124 IPR014720 -
Gso8g1905 1161 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 881 962 IPR011709 -
Gso8g1905 1161 CDD SF2_C_RHA 518 670 - -
Gso8g1905 1161 SMART helicmild6 556 662 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1905 Gso-Chr8 18795629 18825796 Dispersed/Transposed