Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1904 ATGGCACCAAAACCAGTTTCCCTTTCACATTTACTCCATTTAACCTTGTTTCTTGCCACCATCCAACTCTCAGAGCAGTTAGAGTTTTCTCAGTCTCAAACACTTCTCAAGGTTCAGCAACTTCTTGGCTATCCATCAGCACTAGGTACTCTAAGCAGCAACATAGACTTTTGCAACATTGACCCTACCTCATATTTGACATTAGTTTGCTATGAGGATAGCTTGACACAACTGCATGTTGTTGGCAGCAATGAGTATACTCCACTGCCTCAAAACTTCTCCTCAGATACTCTATTTGCTACACTAGGCACTCTTTCAAGCTTGAAAGTCCTCTCTTTGGTTTCTCTTGGACTCTGGGGGAACTTACCTGAAAGCATTGCTCAATTGTCTTCATTGGAAATACTTAACATTAGCTCAAATCACTTCAATGGAGCCATCCCTTCTCAGCTTTCACTTCTGAGGAACCTTCAGTCAGTGGTGCTTGATGATAACAACTTCAATGGTGAAATTTCCAACTGGGTAGGCTCACTACAAGGTTTGGCTGTGCTTAGCATGAGGAACAACTGGCTTAGTGGAAGCCTTCCAACTTCATTGAATGCTCTTCATACCTTGAGGGTGTTAGATCTATCAAATAATCAGTTATCTGGGGAACTTCCCCATCTTAAGAATTTGGCAAACCTTCAAGTTCTTAACTTGGAAAACAACACATTTGGACCTCATTTTCCTTCTCTCCCCACCAAGTTGGTTTCCCTTGTGCTTAGGAATAACAGCTTCAGGTTAAGTGTCCCTTCTAATTTAAGTTCTTTCTATCTGCTCCAAAGGCTAGACCTTTCTTTGAATGGTTTTGTGGGGCCATTTCCACCATCCTTATTGTTAATGCCTTCCATTAATTACCTTGATGTTTCCTCAAATAAATTCACTGGGATGCTTTTCAATAACATGTCATGCAATGATGATCTCCACTTTGTAAATTTGTCTTCAAATCTTCTGAAAGGTGAACTTCCCACTTGTTTAGAACCAAAGACCAGGGTTGTTCTGTATGCTAGAAACTGCTTATCAAACAAGAACCAAGATCAGCACCCTTCAGATTTCTGCAGCAATGAGGCTTTGGCAGTGACAATCATACCCCATCAGCAGAAGCACAAGAGAACAACTAGTAAAGCAATTATCGTATCAAGTATGGGAGGTCTTGTTGGTGGAATGTTGATTGTAGGAGTGGTTATCTTGGTTGTTAGCCGAGTTCATAAGAAACAAGTAGGGAAAATACCTTCAAAGTCCACTTTGGAGCATGTTATCAGCCAGGAGCACAATGAAGATGAAGTGAAAACTACTACAAGGTCCATAATGGAGCATATCATCAAAAGGGTTCCTGACAAAGGTGCTGTGGAAACACTAACAAGATCCATAAAGGAGTACGTCATGAGCCGAGTGAATAACAAGCGTGTTGTGAGGGCATCGACAATGTCCATAATAGAACATGTATCATCAGCAAACACAGCAAAACTACTCACAGATGCAAGGTATATATCAGAAACAATGAAGATGGGAGCCAGCCTTCCTGCTTATAGGACCTTTGCTTTGGATGAACTTAAGGAAGCTACAAATAATTTCGATGAATCATCTTTCATAAGTGAAGGCCCACATGGTCAGATTTATAAGGGGGTTCTCTCTGATGGAATGCACATTGCTATTAGAGGTTTGAAAATGAGAAAGAAACAAGGCCCTCAGACTTACATGCACCATGTTGAGATAATTTCAAAGCTAAGGCATTCACACTTGGTTAGTGCACTTGGGCATGCTTTTGAGTGCAACCAAGATGATTCAAGTGTAAACAATGTATATCTCATATTTGAGTTTGTTCAAAATAAAAGTTTAAGAAGCTGTGTTTCTGGATCTTCTGGGGAAAAGCTTTCTTGGACTCAGAGAATAACAGCTGCAATTGGAGTGGTGAAAGGCATTCAATTTTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTGAAGATAACAGATATTCTTTTGGATAACAATCACAATGTTAAAATAAGCAGTTATAATCTACCACTCTCTGCTGAAAATAAAAGAATGATCAGCAAGGGAACCTCCCCTGGATTAAAAGGAAAAGTCCAAGCAAGGATCCAGGATGCAGACAAGAATGATGTCTATGATATTGGAGTAGTCTTGCTAGAAATCATTCTGGGAAGACCAATAATGTTCCACAATGAAGTTGGAACACTAAAAGATCTTTTACAGGTAAGCATCAAAACCGATGACATAGCTAGAAGGAGCATTGTTGACCCAGCAGTTCATAAGGAATGTTCAGATGAGTCATTAATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTGGTGACCCAACTGAAAGGCCTTCTGTGGAAGATATTCTCTGGAATCTGCAGTTTGCAGCACAAGTTCAGAATTCATGGAGAAGAGACTCAAGTGATCACGATCACAGTTACTCACCAGCGCCATCCTCCAGGGAGACATAA 2517 0.4041 MAPKPVSLSHLLHLTLFLATIQLSEQLEFSQSQTLLKVQQLLGYPSALGTLSSNIDFCNIDPTSYLTLVCYEDSLTQLHVVGSNEYTPLPQNFSSDTLFATLGTLSSLKVLSLVSLGLWGNLPESIAQLSSLEILNISSNHFNGAIPSQLSLLRNLQSVVLDDNNFNGEISNWVGSLQGLAVLSMRNNWLSGSLPTSLNALHTLRVLDLSNNQLSGELPHLKNLANLQVLNLENNTFGPHFPSLPTKLVSLVLRNNSFRLSVPSNLSSFYLLQRLDLSLNGFVGPFPPSLLLMPSINYLDVSSNKFTGMLFNNMSCNDDLHFVNLSSNLLKGELPTCLEPKTRVVLYARNCLSNKNQDQHPSDFCSNEALAVTIIPHQQKHKRTTSKAIIVSSMGGLVGGMLIVGVVILVVSRVHKKQVGKIPSKSTLEHVISQEHNEDEVKTTTRSIMEHIIKRVPDKGAVETLTRSIKEYVMSRVNNKRVVRASTMSIIEHVSSANTAKLLTDARYISETMKMGASLPAYRTFALDELKEATNNFDESSFISEGPHGQIYKGVLSDGMHIAIRGLKMRKKQGPQTYMHHVEIISKLRHSHLVSALGHAFECNQDDSSVNNVYLIFEFVQNKSLRSCVSGSSGEKLSWTQRITAAIGVVKGIQFLHTGIVPGLYSNNLKITDILLDNNHNVKISSYNLPLSAENKRMISKGTSPGLKGKVQARIQDADKNDVYDIGVVLLEIILGRPIMFHNEVGTLKDLLQVSIKTDDIARRSIVDPAVHKECSDESLMTMMEICVRCLSGDPTERPSVEDILWNLQFAAQVQNSWRRDSSDHDHSYSPAPSSRET* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1904 838 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Gso8g1904 838 Gene3D Phosphorylase Kinase; domain 1 496 619 - -
Gso8g1904 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 480 827 - -
Gso8g1904 838 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 433 - -
Gso8g1904 838 Gene3D Ribonuclease Inhibitor 30 150 IPR032675 -
Gso8g1904 838 Gene3D Transferase(Phosphotransferase) domain 1 620 831 - -
Gso8g1904 838 SUPERFAMILY Protein kinase-like (PK-like) 516 810 IPR011009 -
Gso8g1904 838 Pfam Protein kinase domain 540 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1904 838 Gene3D Ribonuclease Inhibitor 151 242 IPR032675 -
Gso8g1904 838 SUPERFAMILY L domain-like 102 351 - -
Gso8g1904 838 MobiDBLite consensus disorder prediction 819 838 - -
Gso8g1904 838 Gene3D Ribonuclease Inhibitor 243 370 IPR032675 -
Gso8g1904 838 Pfam Leucine Rich repeats (2 copies) 203 235 IPR025875 -
Gso8g1904 838 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 480 827 - -
Gso8g1904 838 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 10 433 - -
Gso8g1904 838 ProSiteProfiles Protein kinase domain profile. 537 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1904 Gso-Chr8 18778104 18783634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1904 44 835 Miscellaneous Gene Families AT3G03770 50.814 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gso8g1904 Pkinase 3.8e-18 CL0016