Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1903 ATGAATGGACTCCAAGAATCAACTAACGATGAAGTGGATGTTCCATTGAATGAAGTATCTAGCAAACAGATTGATCCTCAAGAAGATGGTAATAGTGCTCCAAACATTTACAAAAATCCTACACTGAAACTGGTGGCCAAAGTAGTTAATGGGAATAATGAGCATAGGAATGCCAAAAGAGATATTGATCATCAAGAAAAAGTTTTGAAGAGGGCAAACAAGGTCCTGCCTTGTCCTCGTTGCAATAGTTCGGAGACAAAGTTTTGCTACTTCAACAATTATAATGTTAACCAACCTAGGCATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGGGGGACAATTAGAAATGTTCCTCTTGGGGCTGGTAAGCGTAAGAATAAGCACTCGACTTTGCAGTATTGTCTGATACCTGTGACTCCTGATGCTGCATCTGTCAGCCAGACAGATTCCAAACCTGCTAGTGATATGCTTTTATCATCTAGCAGACTTATCAAAGGGATGGAGAACATCTCAAGTCTCAGGGAGGAAACTCCTCTTAGTGAATCCTTAGAAACTGTGTTAAGTCTCAATGGCCAGACAAATATTGAAATGGCCTCTTCCACTCTCAAAGATGATGCTGAGGAGTCTTCCTGCTCTTCTATGAGATCTAATGAAGTAGAGCAGGTTTGTTTGGCACAACACTCTTTAGTTCCTTTACAATCATTTCAATATTATCCTGTTCCTTCATGGTCTTACCAATGGAATCCATGTTGGAATGTCAAGGAGCTTAGGCCTAGAAGCTTAAGTTCTAGACCTGTTTACACAGGTTCTCCAACTATGATTGCAGTTCCTGGCTTCTCCTTACCAACAGTAATACTTCCAGGGGTGCCTTATTCATATTCGGGTTTTATGTCAAACTGGGATGAACAAAAGGAAGATGCTTCATTGGTTGGATCTGCATTTAGTGGCATATCATTGTCTCCATCTTCAGTTAGCAACAGTACTTGTTCAGGTAATAGGTCCCCAACCTTGGGAAAACATTCTAGAGATGGAAGTACACTGGGGGAAGATGCAATGAAACAGAATCTTTGGGTGCCCAAGACTGTAAGAATTAATGACCCAGAAGAGGCTGCAAATAGTTCTATATGGTCAACTTTGGGAACAAAGTCTGAACAGAACAAACTCATTATGAAAGGAAGTATTTTTAAATCATTTGAACCTAAGGCAAGTGCCAGTTCTCATATTTTAGAGGATAATCAAATTCTAAGGGCCAACCCTGCAGCTTTCTCGCGCTCTGAGTCTTTTCAGGAAAGCATGTAA 1305 0.4046 MNGLQESTNDEVDVPLNEVSSKQIDPQEDGNSAPNIYKNPTLKLVAKVVNGNNEHRNAKRDIDHQEKVLKRANKVLPCPRCNSSETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPLGAGKRKNKHSTLQYCLIPVTPDAASVSQTDSKPASDMLLSSSRLIKGMENISSLREETPLSESLETVLSLNGQTNIEMASSTLKDDAEESSCSSMRSNEVEQVCLAQHSLVPLQSFQYYPVPSWSYQWNPCWNVKELRPRSLSSRPVYTGSPTMIAVPGFSLPTVILPGVPYSYSGFMSNWDEQKEDASLVGSAFSGISLSPSSVSNSTCSGNRSPTLGKHSRDGSTLGEDAMKQNLWVPKTVRINDPEEAANSSIWSTLGTKSEQNKLIMKGSIFKSFEPKASASSHILEDNQILRANPAAFSRSESFQESM* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1903 434 Coils Coil 55 75 - -
Gso8g1903 434 MobiDBLite consensus disorder prediction 327 348 - -
Gso8g1903 434 Pfam Dof domain, zinc finger 74 130 IPR003851 GO:0003677|GO:0006355
Gso8g1903 434 MobiDBLite consensus disorder prediction 327 343 - -
Gso8g1903 434 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Gso8g1903 434 MobiDBLite consensus disorder prediction 1 37 - -
Gso8g1903 434 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 2 434 - -
Gso8g1903 434 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Gso8g1903 434 PANTHER CYCLIC DOF FACTOR 2 2 434 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1903 Gso-Chr8 18769957 18774234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1903 67 434 C2C2-Dof Transcription Factor Family AT3G47500 35.038 1.13e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso8g1903 zf-Dof 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1903 - - gmx:102664782 874.774