Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1894 ATGGATGTCGAGGCAGTAGATGAAGGGGAAAACAGTGATAGACCTGCTTCTGAAAATGTTGAAACTGAAAAAGGCCAGGAACAAAATATGACTGTAAACTTGGCTGAAAGAGAAGTAAATAATCAGAATGGTGATGCATATAGGAAGCCACAAGTGGGCATGCTGTTTGAATCTGAAGATGCTGCAAAATCATTTTTTGATGCATATGCAAGACATGTAGGATTTAGCACACATGTTGGTCAATTCAGTCGTGCTAAGCCTGATGGTCCAATTATAACTTGGGACTTTGCATGTTCCAGGGAGGTATTTAAAAGGAAGAACATAGTTAGTTGCAATGCAATGCTTAGAGTAGAGAGAAAAGATGGAAACTGGATAGTGACAAAATTTGTTGAGGACCATAACCATTCCCTTGCTTCCTCTAGAAAGGTGCAGAACCTTCAACCCGGTAGGCATTTTGTAGGTGCTGCAAGGAATGTTACAACAGAGACATTTGATGCCCGTAATGAATCCTATGTTTCCGTGAATGGAAATCATTTAGAACCAATTGGTTCAGTTAGGAGCTCCTCTCTAGCAGAAAAATGTCATCCAATGAGAAACATTGAGTCTCTTACCTATGCAAGATCTTCTCGAAAGAGGACCCTTGGAAGAGATGCTCAAAATCTTCTGAATTATTTTAAGAAGATGCAGGGAGAAAACCCTGGCTTCTATTATGCGATACAGCTAGATGATGAAAATCGCATGACCAATGTATTCTGGGCTGATGCAAGGTCAAGAACAGCGTATAATTACTTTGGTGATGCTGTAATTTTTGACACCATGTATAGACCAAATCAATACCAAGTCCCATTTGCTCCATTTACAGGATTCAATCACCACGGCCAGATGGTTATATTTGGTTGTGCATTACTTCTAGATGAATCTGAGTCCTCCTTTACTTGGCTATTCAAGACGTGGCTATCTGCTATGAATGATCGACCACCTGTTTCCATAACCACAGACCAAGATAGAGCCATACAAGCAGCTGTTGCTCATGTGTTTCCAGAAACTCGCCACTGTATTTGTAAGTGGCACATTTTGAGAGAAGGTCAAGAAAGATTGGCTCATATTTACCTTGCTCATCCTTCATTCTATGGGGATCTATACAGCTGTATCAATTTTTCTGAGACTACCGAGGATTTTGAATCAACATGGAAGTCTCTTCTGGATAAATATGATCTTCAGAAAAATGATTGGCTTCAAGCAGTGTATAATGCTCGCAAACAATGGGCCCCTGTTTACTTTCATGATACTTTCTTTGCTGCAATTACTTCAAACCATGGGGTTAGCTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATATCTTTATTTTTTAGGCAGTATGAAAGATCTCTTGAACATTCATTGGAAAAAGAAATAGAAGCAGATTATGAGACTGTTTGTAACACACCTGTACTGAAGACTCCATCACCAATGGAACAACAGGCAGCAAATATGTACACTAAGAAGATTTTTGCAAAATTTCAGGAGGAACTGGTGGAAACTTTTGCTTATACTGCAAATAATGTTGAGGATGATGGTGTGATCAGTAAATACAGGGTTGCAAAATATGAATATGATCACAAGGCATACATGGTCACATTGAATATCTCTGAAATGAAGGCAAATTGCAGCTGCCAGATGTTTGAATACTCAGGCATTCTTTGTCGACATATATTGACTGTCTTCACTGTTACAAATGTTCTTACCCTTCCATCGCACTACATTTTGAAGCGATGGACAACGAATGCAAAATCTGATATTAGAACTTATGAAAAAATAACAGATCCACTTGACATTGAAAATCTTACTGTACGTTTTAATAGTTTATGTCGAGAAGCCATTAAGCTTGCTGAAGAAGGGGCAATTGCTGTAGAGACTTATAATGCAACAATGAATGCTTTAAGAGAGGGTGCTAAAAGGGTAGGTATTATGAAGAAAAATGTTGCAAAAGTCACACCTCCAAACACTCATGGTAATGGAAGCTGCCTGGAAGACAATAGCAAGAAGAGACCTTCATCAATTTCTGATGTCATCCCATCATTATGGCCTTGGCAAGATTCAGTGCCACATCACTTCAATCTTAATGACCTTGGGCTTCCTGTTACTGATCTGAATACCCCCAGTATGGCTCCTGTTTCTATTCACCGAGATGGTGGCCCTCTAGATAACACTGTTGTCCTTACTTGTTTCAAGTCTATGACTTGGATGATCGAAAATAAGAATTCGAGCTCATCCAGTAAAATTGCAGTCATCAACATGAAGCTTCAAGATTATGGTAAGGGCCCTTTAGGAGAGACAGAAGTGCAATTTAGGGTGACAAGGGTCACTTTGGAGCCTATGTTGAGGTCTATGACTTACATCAATCAACAGCTAAATGCACCAGTCAATAGAGTTGCAATCATCAATCTGAGGCTCCAGGATACAAAGACAACTACTGGGCAAACAGAGGTGAAATTCCAAGTTTCTAGAGATACGCTGGGTTCCATGCTGAGATCTATGGCCTATATCCAGGAGCAGCTATAA 2568 0.3964 MDVEAVDEGENSDRPASENVETEKGQEQNMTVNLAEREVNNQNGDAYRKPQVGMLFESEDAAKSFFDAYARHVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNIVSCNAMLRVERKDGNWIVTKFVEDHNHSLASSRKVQNLQPGRHFVGAARNVTTETFDARNESYVSVNGNHLEPIGSVRSSSLAEKCHPMRNIESLTYARSSRKRTLGRDAQNLLNYFKKMQGENPGFYYAIQLDDENRMTNVFWADARSRTAYNYFGDAVIFDTMYRPNQYQVPFAPFTGFNHHGQMVIFGCALLLDESESSFTWLFKTWLSAMNDRPPVSITTDQDRAIQAAVAHVFPETRHCICKWHILREGQERLAHIYLAHPSFYGDLYSCINFSETTEDFESTWKSLLDKYDLQKNDWLQAVYNARKQWAPVYFHDTFFAAITSNHGVSSFFDGYVNQQTTISLFFRQYERSLEHSLEKEIEADYETVCNTPVLKTPSPMEQQAANMYTKKIFAKFQEELVETFAYTANNVEDDGVISKYRVAKYEYDHKAYMVTLNISEMKANCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTTNAKSDIRTYEKITDPLDIENLTVRFNSLCREAIKLAEEGAIAVETYNATMNALREGAKRVGIMKKNVAKVTPPNTHGNGSCLEDNSKKRPSSISDVIPSLWPWQDSVPHHFNLNDLGLPVTDLNTPSMAPVSIHRDGGPLDNTVVLTCFKSMTWMIENKNSSSSSKIAVINMKLQDYGKGPLGETEVQFRVTRVTLEPMLRSMTYINQQLNAPVNRVAIINLRLQDTKTTTGQTEVKFQVSRDTLGSMLRSMAYIQEQL* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1894 855 Pfam MULE transposase domain 268 360 IPR018289 -
Gso8g1894 855 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 35 799 - -
Gso8g1894 855 ProSiteProfiles Zinc finger SWIM-type profile. 545 581 IPR007527 GO:0008270
Gso8g1894 855 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 799 IPR031052 GO:0006355
Gso8g1894 855 Pfam FAR1 DNA-binding domain 64 138 IPR004330 -
Gso8g1894 855 Pfam SWIM zinc finger 533 579 IPR007527 GO:0008270
Gso8g1894 855 SMART 26again6 556 583 IPR006564 GO:0008270
Gso8g1894 855 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1894 Gso-Chr8 18603064 18611355 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso8g1894 MULE 4.8e-27 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1025 4 15127034 15133985 Gso8g1894 8 18603064 18611355 PCT
Gso6g2589 6 47673946 47680108 Gso8g1894 8 18603064 18611355 PCT
Gso8g1894 8 18603064 18611355 Gso4g1025 4 15127034 15133985 PCT
Gso8g1894 8 18603064 18611355 Gso6g2589 6 47673946 47680108 PCT