Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1442 ATGTTAATTTTGGTGGGGAACGTGCAAGGAACAATGACTTCTTTTGCTTCTCCAGTGAGTTTGGGGAACCTCATGGGTGTGAGTTCCTCTGGAAGGTCTCATTCTGTGGTGAGGAGAGTCTCTCTTTCAAGAGGGAACTGCAGGGGGAGAAAGAGATGGCATTGTGTGTCATTGTCTGTGTGTAGATATTCAGTTACCACAACTGATTTTGTTGCTGACCAAGGGAATTCAGTGTCCCTTGATTCTAACAGTAGTAGGAGTAAGGGTGGTGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTGTTGAAGTCCCCAGAGAATAAGAGTGACCCCATTTTGGGGCCCTCAAGGACTACTGGGGATGTGGAAGAGAGGAATAAGGTGATTGAATCACTCGGGGAGGTGTTGGAGAAGGCAGAAAAGCTTGGGAGTTCGAAGGTGAATGGGGACAGGAATAATGGTTCAGTGAATAAACCGGTAAGGAGTAATGCAGATGCTAGTCCTAAGGCTGATAAACCGGTGAATTCAGCAGCACCTCAGAAGTCTAAAACGTTGAAGAGTGTATGGCGTAAAGGGGACACGGTTGCATCGGTTCAGAAGGTTGTGAAGGAAGTACCAAAGCCTATTAATGACAAGAATGAAGGAGAGAGGACTCAAACAAGGGGAGGGGAGAAGGTGGTATCTCAAACTCATGCTCCTCAACCGTCTTTGAAACCTCAACCACCTTCGCAACCTCAACCGATGTTGCTATCAAAACCTTCAATAGCTCCCCCACCTGCCAAAAAACCTGTTGTCTTGAAGGACAGGGGAGCAGCCGAGACAACATCTGTTAAATCTAAAGAAAAGAAGTCGCCCATCTTGATTGATAAGTTTGCTTCCAAGAAACCGGTAGTAGATCCTCTAATTGCACAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGCACCTCCCCCGGGAAAGTTTAAAGATGATTTCCGGAAGAAAGGTGCTATGGCTGGGGGACCAAGAAGACGGATTTTAGAGGATGATGCAATTCATGACGAGGACGCATCTGAACTCAATGTCTCTATTCCTGGTGCTGCAACAGCTAGAAAAGGAAGGAAATGGAGTAAAGCAAGCCGAAGGGCAGCACGACTCCAGGCTGCCAGGGATGCAGCTCCCATCAAAGTAGAAATTCTAGAGGTTGGAGACAAAGGTATGCTGGTGGAGGAATTAGCCTACTGTTTGGCAACCAGTGAAGGTGAAATCCTGGGTTATCTATACTCCAAGGGAATTAAACCAGATGGGGTACAAACAATAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTACGATGTGGAAGTCATAGATGCTGATCCATTCAAAGTTGAAGGTTTAGTTAAGAAAAGAGAAATTCTTGACGAAGATGACTTCGACAAACTCAAGGATAGGCCCCCTGTTATTACTATTATGGGACATGTGGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGGGCCTATAAAGTGGAAGTACCTGTGGATGGGAAAAAGTTGCCGTGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGAGCAATGAGAGCTCGCGGAGCAAGTGTTACAGACATGGCTATTATTGTTGTGGCTGCCGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCAATAAACAAGATAGATAAAGATGGAGCAAATCCAGAACGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTGACATCCCAATGGTTCCGATAAGTGCTCTTAAAGGGAAGAATATAGATGATCTTTTGGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCGAAGGGAACAGTCGTTGAGGCAGGGCTAGATAAATCGAAGGGACCATTTGCTTCATTTATTGTGCAGAATGGCACCCTTAGACGGGGAGATATAGTAGTTTGTGGAGAAGCTTCTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGGGTTGATGAAGCTTCACCTTCTATGCCTGTACAGGTTATTGGGTTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAATCCCTCGATACTGCACGTGAAAGGGCAGAGGCTCGTGCTGAGTCATTGCGTAATGAGCGTATTTCAGCAAAGGCAGGGGATGGAAAGGTCACCCTTTCTTCCTTAGCTTCAGCCGTTTCATCAGGAAAGCTGTCTGGACTAGATTTGCATCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTCAGAAAAGCGCTGGAGATTCTACCACAAGACAATGTCACACTGAAGTTTTTGTTGGAGGCGACAGGTGATGTAAACACAAGTGATGTGGACCTTTCAGTTGCAAGCAAGGCCATCATTTTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGGAGAGAACAAAGCTGTTGAGATTAGATTATACAGAGTCATTTATGAATTAATTGATGATGTACGAAAAGCAATGGAAGGGCTACTAGAACCTGTTGAGGAACAAGTAACAATTGGTTCAGCAGTAGTACGAGCCGTATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAGGGGAAAATACTAAATGACTGTGGTATTCGAGTCAAGCGGAAGGGGAAAGTAGTTCATGTTGGTATTCTTGATTCTTTGAGACGGGTGAAGGAGATTGTTAAAGAGGTAAATGCCGGTCTCGAGTGTGGACTTGGGTTAGAAGACTTTGATGATTGGGAAGAGGGTGACATTCTTGAAGCCTTCAACACATTTCAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCCTCAATGGCATCTGCCGTGGAGGGAGTAGGAGTTGCATTGTAG 3033 0.4517 MLILVGNVQGTMTSFASPVSLGNLMGVSSSGRSHSVVRRVSLSRGNCRGRKRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSRSKGGDDGAGFVLKPPPKPVLKSPENKSDPILGPSRTTGDVEERNKVIESLGEVLEKAEKLGSSKVNGDRNNGSVNKPVRSNADASPKADKPVNSAAPQKSKTLKSVWRKGDTVASVQKVVKEVPKPINDKNEGERTQTRGGEKVVSQTHAPQPSLKPQPPSQPQPMLLSKPSIAPPPAKKPVVLKDRGAAETTSVKSKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPPPGKFKDDFRKKGAMAGGPRRRILEDDAIHDEDASELNVSIPGAATARKGRKWSKASRRAARLQAARDAAPIKVEILEVGDKGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDADPFKVEGLVKKREILDEDDFDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKKLPCVFLDTPGHEAFGAMRARGASVTDMAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVPISALKGKNIDDLLETVMLVAELQELKANPDRSAKGTVVEAGLDKSKGPFASFIVQNGTLRRGDIVVCGEASGKVRALFDDGGKRVDEASPSMPVQVIGLNNVPIAGDEFEVVESLDTARERAEARAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALEILPQDNVTLKFLLEATGDVNTSDVDLSVASKAIILGFNVKAPGSVKSYGENKAVEIRLYRVIYELIDDVRKAMEGLLEPVEEQVTIGSAVVRAVFSSGSGRVAGCMVTEGKILNDCGIRVKRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDILEAFNTFQKKRTLEEASASMASAVEGVGVAL* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1442 1010 SUPERFAMILY Translation proteins 657 741 IPR009000 -
Gso8g1442 1010 TIGRFAM small_GTP: small GTP-binding protein domain 483 644 IPR005225 GO:0005525
Gso8g1442 1010 MobiDBLite consensus disorder prediction 209 225 - -
Gso8g1442 1010 MobiDBLite consensus disorder prediction 74 89 - -
Gso8g1442 1010 ProSitePatterns Initiation factor 2 signature. 943 965 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gso8g1442 1010 MobiDBLite consensus disorder prediction 144 286 - -
Gso8g1442 1010 MobiDBLite consensus disorder prediction 74 129 - -
Gso8g1442 1010 CDD IF2_eIF5B 484 650 - -
Gso8g1442 1010 Hamap Translation initiation factor IF-2 [infB]. 7 990 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gso8g1442 1010 Gene3D Translation factors 657 773 - -
Gso8g1442 1010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 657 IPR027417 -
Gso8g1442 1010 MobiDBLite consensus disorder prediction 150 166 - -
Gso8g1442 1010 Gene3D - 478 656 IPR027417 -
Gso8g1442 1010 MobiDBLite consensus disorder prediction 239 264 - -
Gso8g1442 1010 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 41 1000 - -
Gso8g1442 1010 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 41 1000 IPR015760 -
Gso8g1442 1010 PRINTS GTP-binding elongation factor signature 485 498 IPR000795 GO:0003924|GO:0005525
Gso8g1442 1010 PRINTS GTP-binding elongation factor signature 537 547 IPR000795 GO:0003924|GO:0005525
Gso8g1442 1010 PRINTS GTP-binding elongation factor signature 553 564 IPR000795 GO:0003924|GO:0005525
Gso8g1442 1010 PRINTS GTP-binding elongation factor signature 589 598 IPR000795 GO:0003924|GO:0005525
Gso8g1442 1010 Coils Coil 740 767 - -
Gso8g1442 1010 CDD IF2_mtIF2_II 661 742 IPR044145 -
Gso8g1442 1010 Gene3D - 789 894 IPR036925 -
Gso8g1442 1010 Pfam Elongation factor Tu GTP binding domain 486 646 IPR000795 GO:0003924|GO:0005525
Gso8g1442 1010 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 481 654 IPR000795 GO:0003924|GO:0005525
Gso8g1442 1010 TIGRFAM IF-2: translation initiation factor IF-2 403 992 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gso8g1442 1010 SUPERFAMILY Translation proteins 896 990 IPR009000 -
Gso8g1442 1010 Gene3D Translation factors 895 991 - -
Gso8g1442 1010 Pfam Translation-initiation factor 2 789 882 IPR023115 -
Gso8g1442 1010 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 788 900 IPR036925 -
Gso8g1442 1010 CDD mtIF2_IVc 900 982 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1442 Gso-Chr8 13998013 14006679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1442 482 883 Eukaryotic Initiation Factors Gene Family AT1G21160 29.325 1.58e-29 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1442 8 13998013 14006679 Gso8g1442 8 13998013 14006679 ECH