Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1396 ATGGGGAAAGGAAGAGCACCATGCTGTGATAAGACTCAAGTGAAGAGAGGTCCTTGGAGCCCTGCAGAAGACCTTAAACTCATAGCCTTCATCCAGAAATATGGCCACGAAAACTGGCGTGCTCTCCCAAAACAAGCAGGGCTTCTGCGATGTGGGAAAAGTTGTCGCTTGAGATGGATCAATTATCTCAGGCCTGATGTGAAGAGAGGCAATTTTACACTAGAGGAAGAGGAAAACATAATAAGGCTACACAAAGCCTTGGGAAACAAGTGGTCGAAGATTGCATCACGTTTGCCTGGTAGGACTGACAATGAGATCAAGAATGTGTGGAACACCCACTTGAAGAAAAGATTGGCTCCAAAAAAAGGTTCAGAATCAAGTGCTGATGAATCCAAGCCAGAATCATCAATCACTTCCGCCTCTTCCTCATCATCTGAATCGTTTTTCTCTTATGAGAGACCAAATTCACCAAAGACCACAACACCTTGTAACAATGATCAATTTAATGACCAAGCAGAGAAATTATCAATTGAAGATAAAATGGAGCAGGATTCAGAAAAACAAGTGTCCAATGAACTTGCTAACATCACTGAGGATCCAAAAGGGTCATCAGTTTCATTGTCTTCTGATGAGTCAAACATAGTAAACACAAGCCAGATTGTTGAACACAAACCAGAAGAAGAACAATTGGCCTCTCCATTACCCTACTTAGGACATTATGATGTTGGAAGCATGTTAGAAGAGGTGGATAAACCAAACCAACTGATTGAAATTCCATGGGAGCCAGATTATGATTTTTGGAAGTTGTTAGATGATGATAACAGCCTTGAATCTTTTCAATCAAATGAAGTCCAATTAGGTGAGTTCCCAGCCATCCAAAACATCATTCTTGGAGAAGAGAGTGTTCATGATGCTGAAGCCAAGAAGTGGTCCCAAGACTTTGAGAATGAGTTTGGAGTAGTTGGTGAGATGAAGGAGTCAAACAAGGATCATTTCCTACCAAAGAACTATGCAGTTGAGCCAGAAATGGACCACACTCAAGCATTTGATTTTGATGACATTGACATGGCAAGGCCAGAATCTGAATTAGACTTGGGTTATATCCAATTATGGTCCTCTTGGCCTCAAAATAATAATAATAATAATAATAATAGTCTTTAG 1161 0.4048 MGKGRAPCCDKTQVKRGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTLEEEENIIRLHKALGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLAPKKGSESSADESKPESSITSASSSSSESFFSYERPNSPKTTTPCNNDQFNDQAEKLSIEDKMEQDSEKQVSNELANITEDPKGSSVSLSSDESNIVNTSQIVEHKPEEEQLASPLPYLGHYDVGSMLEEVDKPNQLIEIPWEPDYDFWKLLDDDNSLESFQSNEVQLGEFPAIQNIILGEESVHDAEAKKWSQDFENEFGVVGEMKESNKDHFLPKNYAVEPEMDHTQAFDFDDIDMARPESELDLGYIQLWSSWPQNNNNNNNNSL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1396 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 336 - -
Gso8g1396 386 SMART sant 15 65 IPR001005 -
Gso8g1396 386 SMART sant 68 116 IPR001005 -
Gso8g1396 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gso8g1396 386 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Gso8g1396 386 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gso8g1396 386 Gene3D - 16 68 - -
Gso8g1396 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gso8g1396 386 PANTHER - 1 336 - -
Gso8g1396 386 MobiDBLite consensus disorder prediction 130 168 - -
Gso8g1396 386 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Gso8g1396 386 CDD SANT 71 114 IPR001005 -
Gso8g1396 386 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gso8g1396 386 CDD SANT 18 63 IPR001005 -
Gso8g1396 386 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gso8g1396 386 MobiDBLite consensus disorder prediction 116 168 - -
Gso8g1396 386 Gene3D - 70 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1396 Gso-Chr8 13342363 13345360 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso8g1396 Myb_DNA-binding 2.3e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1396 8 13342363 13345360 Gso8g1396 8 13342363 13345360 ECH