Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0345 ATGAGAAACTATATGCAGTTTCTTAATCCTCAGATCTTGTGCTTCCTATTTTTCAGTGCTCTATTATTATGTCTAGTTGAAACAAAGTCCACCATTGAACCATGCAATTCCTCAAACTCGTGCCCCTCTCTTCTCTCTTATCTCTTGCCATGGGACTCCAAGCTCTCCGAAATCGCCACTCGCTTCAATGTAAACTTTTTTGATATCTTGGCCTCAAACTCTCTCTTCCCCATAACACCATCAAGTGCACACCAAATCCTTAGTGCCAAATCACAAGTGAAAATACCAATCTCATGTTCTTGTGTGGATGGCATCCGAAGGTCCATGTCAACCATTTACACTGTTCATGCAGCTGATACACTTGCTTCCATATCAGAAGGCTATGGTGGATTGGTTAGTGCTGAACAAATCAAGATTGTGAACGCCATCAATGCCACCAACCCTTTGACATATAGAGGCACCCTTGTTATTCCACTGCCATGCACGTGTTTTGACAATGTGAATAATGGGGGAAATGCTATTTATATGTCATATGTGGTGCAGAGAAGGGAGAGCCTGGGGAGCATAGCAACCAAGTTTGGTACAACTGTTTCGGACTTGGAAACTGTAAATGGCTTTGGGGAAGCTACGGTAGATCCAGGAGACATTCTATCTATTCCCATTGCAGCATGTTCATCAGCAACCTTGAATTGGTACGATGAGAGTATGATAGTCCCAAATGGCTCATATACATTAACTGCCACCAACTGCATCAAATGCACTTGTGAACCAACGGATATCACGTTGCAATGTGTTCCTTCTGGACTAGACGTCCCCTGCTATAATTTACGTTGCAAAGGATCCAATCTTATTATTGGTGATCAATGTGTGGATCTTTCACAAACAGCTTGCAATGTGAGCCAATGTGTTTACCGTGGCCATAGGGGTGGCAAAATTCTGAGTAGTATGAAGAAATCTTCTTACCTCGAGTGCCCGGATAGTTTGTGTCATAGCGGACCATCATGTTGGCCTTCCTCATCACCATATCCTGAAGACCCATTTGGTATGTCTCCAAAGCCATCCCCCTCCTTGCCACTACCAGTTTCTAAGGCTGCTCTGAGGACTCTTGCCTCCAGTGGAAGGCTTGGTCCATTTTTATTCAATGTGCTGCAATTATTCTTGTTAAAATTTATCATTTATTTTCTGATTTGA 1191 0.4291 MRNYMQFLNPQILCFLFFSALLLCLVETKSTIEPCNSSNSCPSLLSYLLPWDSKLSEIATRFNVNFFDILASNSLFPITPSSAHQILSAKSQVKIPISCSCVDGIRRSMSTIYTVHAADTLASISEGYGGLVSAEQIKIVNAINATNPLTYRGTLVIPLPCTCFDNVNNGGNAIYMSYVVQRRESLGSIATKFGTTVSDLETVNGFGEATVDPGDILSIPIAACSSATLNWYDESMIVPNGSYTLTATNCIKCTCEPTDITLQCVPSGLDVPCYNLRCKGSNLIIGDQCVDLSQTACNVSQCVYRGHRGGKILSSMKKSSYLECPDSLCHSGPSCWPSSSPYPEDPFGMSPKPSPSLPLPVSKAALRTLASSGRLGPFLFNVLQLFLLKFIIYFLI* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0345 396 CDD LysM 111 149 IPR018392 -
Gso8g0345 396 SUPERFAMILY LysM domain 176 220 IPR036779 -
Gso8g0345 396 Gene3D LysM domain 169 229 IPR036779 -
Gso8g0345 396 Gene3D LysM domain 105 168 IPR036779 -
Gso8g0345 396 CDD LysM 177 219 IPR018392 -
Gso8g0345 396 Pfam LysM domain 178 220 IPR018392 -
Gso8g0345 396 SMART LysM_2 112 158 IPR018392 -
Gso8g0345 396 SMART LysM_2 177 220 IPR018392 -
Gso8g0345 396 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 346 - -
Gso8g0345 396 ProSiteProfiles LysM domain profile. 111 157 IPR018392 -
Gso8g0345 396 ProSiteProfiles LysM domain profile. 176 219 IPR018392 -
Gso8g0345 396 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 12 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0345 Gso-Chr8 3268883 3271785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0345 10 365 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 41.144 1.65e-81 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0345 - - gmx:100819382 746.117