Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1941 ATGTCAGAGGTTAAGGACCCTGCGATAAAGCTTTTTGGAAGGACAATTTCGCTGACACACACACACATCAATGATTCTTCTTCTTCTTCTGCACCTGCTCGTGCCCCTTCATCTTCCTCTTCTCCTCGTGAAGTTACCTCTTCTGCAACACAACAACAACATGAACCTGAGGAACCATCAAGGAAAGAACTTACCTCATCACAAGATGATGATGGCTCACATCAAACCACAGAGGATTTAAAATCCCCCACGACATCTTCAGGCATATTTGAGAATCCTAAGACTCCCTCACCAGAAACTGAGACATCAGTCCCGAAATCCTCCACAAATGGAGAACAAAGCGAGACAAGTGCTTCTGATGAAAAAACACCAAAGAAACCCGACAAGGTGCTTCCATGCCCACGATGCAACAGCATGGACACCAAGTTCTGTTACTACAACAACTACAATGTCAACCAGCCTCGTCATTTCTGCAAGAACTGCCAAAGATACTGGACTGCTGGAGGTACAATGAGGAATGTGCCGGTAGGAGCCGGTCGTCGAAAGAACAAAAATTTCCCGGCGACCGCATCACATTACCGGCACTTAATGTTCCCAGAGGGGCTTCAAGGAGCCACACTCAATGCCCCCAATGGATTGCATAATGCTGTGTTGGGAAATGGAGCAGCTGTTTTGACCTTTGGTCCTGATTCTCCCCTTTGTGATACAATGGCATCAATGTTGAACATTGCAGAGCGAGCACAAAGTTGTGTTCCAAATGGGTTTCAAGCAACTGAGCCGAATAGTTTTGTTTCCTATAGAAAGGAGGAGGATGGAAGTACTAGTGGTCACTCTACTGGAGTTTCTGTTGCAACAACTTCAACTTCAAGCCATAGTGGCTCACATGAATCAGTTGATAAAAGGGTTGAAGGTTTCACTCCTCAATTGCCATATTTCCCAAGTGGCCCTTGGCCTTATCCTATGCCTCCTCCTACATTTTGCCCACCAGGGTACCCTTTATCATTCTATACTACACCAGCATATTGGGGTTGTATGCCACCCTCTTGGAATAACAATATATCATCTATCTCACCTCAATCTTCTGTTAACAACTCTGTCTCTGTCCTTACTTTAGGGAAACACTCAAGGGATGGAAACATCATTGCCCCATCCAATTCACAAAGAGAAATGCATGATATGGAGCACAAGAGCTCAGAACACAATGTCTTGATCCCCAAGACTCTTAGAATTGATGACCCTAGTGAAGCTGCAAAGAGTTCCATTTCCATGTGGTCAAAACTAGGGATCAAGGATGATAAGGCCGGTTCCGGAGGCCTTTTCAAGGCTTTTCCATCATCCAAGGGAAACGACATGAATCATCACATGGTTGAAGCATCACCGCTGTTGCAAGCCAACCCTGCGGCTCTATCGCGGTCTCTTACCTTCCGTGAACAGACCTAA 1440 0.4562 MSEVKDPAIKLFGRTISLTHTHINDSSSSSAPARAPSSSSSPREVTSSATQQQHEPEEPSRKELTSSQDDDGSHQTTEDLKSPTTSSGIFENPKTPSPETETSVPKSSTNGEQSETSASDEKTPKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNFPATASHYRHLMFPEGLQGATLNAPNGLHNAVLGNGAAVLTFGPDSPLCDTMASMLNIAERAQSCVPNGFQATEPNSFVSYRKEEDGSTSGHSTGVSVATTSTSSHSGSHESVDKRVEGFTPQLPYFPSGPWPYPMPPPTFCPPGYPLSFYTTPAYWGCMPPSWNNNISSISPQSSVNNSVSVLTLGKHSRDGNIIAPSNSQREMHDMEHKSSEHNVLIPKTLRIDDPSEAAKSSISMWSKLGIKDDKAGSGGLFKAFPSSKGNDMNHHMVEASPLLQANPAALSRSLTFREQT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1941 479 MobiDBLite consensus disorder prediction 20 132 - -
Gso7g1941 479 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 479 - -
Gso7g1941 479 ProSitePatterns Zinc finger Dof-type signature. 133 169 IPR003851 GO:0003677|GO:0006355
Gso7g1941 479 ProSiteProfiles Zinc finger Dof-type profile. 131 185 IPR003851 GO:0003677|GO:0006355
Gso7g1941 479 MobiDBLite consensus disorder prediction 20 54 - -
Gso7g1941 479 PANTHER CYCLIC DOF FACTOR 2 1 479 IPR045174 GO:0003700|GO:0006355
Gso7g1941 479 MobiDBLite consensus disorder prediction 78 117 - -
Gso7g1941 479 MobiDBLite consensus disorder prediction 275 293 - -
Gso7g1941 479 MobiDBLite consensus disorder prediction 267 297 - -
Gso7g1941 479 Pfam Dof domain, zinc finger 128 185 IPR003851 GO:0003677|GO:0006355
Gso7g1941 479 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1941 Gso-Chr7 43114505 43118119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1941 4 477 C2C2-Dof Transcription Factor Family AT5G39660 40.792 4.05e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso7g1941 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1941 - - gmx:100813315 849.736