Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1686 ATGTTTGGTGGTAAATGTGAGAAAATGGTAGCAGTCACCCCTCAAACAGCGTCTAACAAATGGACACAGACACAACAGATAGATGATCACAAGGCCCCTATGGGAAGAATCATGGAAAAACCAAGCCAAGATCTTCTTCAGCAGCAGCAACAAGCCCTAAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTATAACAACTATAGTTTGTCACAGCCTAGGCATTTTTGCAAAGCTTGCAAGCGTTACTGGACAAGAGGTGGCACTCTCAGAAACGTTCCTGTTGGTGGTGGCTGCAGAAAAAACAAGCGTATGAAGCGTCCAACAAACGGTGATTCTTCTTCTGCTAACTCTCCTTCTTCGTCCACTCCTAGCGCCAGTTCAAACCCTCCTTCGCAGCCCCACATCGATAATATTATTGTTTCTGGCTCCGCCACAAACCATATAAATAATATCAACCCTTTGTTTTATGGTGGTGATGTGATGAATAATGTTCCTTTCCCAAAGTTTAATCTTCTTCAGTCTCAGCTGAATGCTCTTGGGTTAGGTTTTTCATCTGGGGTTAGAGAGAATGGGTTTAGCACTACTTCAAATAACAACTTTTTTTCTGCTTATAACTCTATCTTTGGTTCTTCTTCTTCCTCAACTTGTGCACCCTCAACTCCTGTTATGGCTTCCTTGCTGAGTTCCACTCTTCTGCAACAAAATTTTATGGGTGGTGGTGGTGGTGGGGTGAAGGGTCGTGATCATGATCAAGGTGACAATACTTTCCATGGCTTGGCACCGCTACAAGGGTTGCGAGTGGAAGGGGATAGTAATAATAATATTGGCTCAAAAGAAGTGAAAGGTGAAGGACAAAACAGGTTTGAGTGGAGCAATAATAATAACAACAACAACAACAATGGTGGTGGTGGTCAAAACCAGATGGAGCATGTGGGTTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACGGGTTTGGGTGCTTGGAGTGATCAACCTAACATTGGTCCTTCAGTCACTTCTCTGATCTAG 1047 0.4374 MFGGKCEKMVAVTPQTASNKWTQTQQIDDHKAPMGRIMEKPSQDLLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRMKRPTNGDSSSANSPSSSTPSASSNPPSQPHIDNIIVSGSATNHINNINPLFYGGDVMNNVPFPKFNLLQSQLNALGLGFSSGVRENGFSTTSNNNFFSAYNSIFGSSSSSTCAPSTPVMASLLSSTLLQQNFMGGGGGGVKGRDHDQGDNTFHGLAPLQGLRVEGDSNNNIGSKEVKGEGQNRFEWSNNNNNNNNNGGGGQNQMEHVGLSDPNSLYWNTATGLGAWSDQPNIGPSVTSLI* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1686 348 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Gso7g1686 348 MobiDBLite consensus disorder prediction 269 311 - -
Gso7g1686 348 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Gso7g1686 348 Pfam Dof domain, zinc finger 51 107 IPR003851 GO:0003677|GO:0006355
Gso7g1686 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 334 IPR045174 GO:0003700|GO:0006355
Gso7g1686 348 MobiDBLite consensus disorder prediction 271 311 - -
Gso7g1686 348 MobiDBLite consensus disorder prediction 97 141 - -
Gso7g1686 348 MobiDBLite consensus disorder prediction 112 141 - -
Gso7g1686 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 5 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1686 Gso-Chr7 38904521 38909368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1686 53 348 C2C2-Dof Transcription Factor Family AT1G28310 40.244 1.43e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso7g1686 zf-Dof 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1686 - - gmx:778101 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1686 7 38904521 38909368 Gso15g0654 15 5834082 5836213 PCT
Gso7g1686 7 38904521 38909368 Gso11g2641 11 42383122 42385376 PCT
Gso15g0654 15 5834082 5836213 Gso7g1686 7 38904521 38909368 PCT
Gso11g2641 11 42383122 42385376 Gso7g1686 7 38904521 38909368 PCT