Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1685 ATGGAACAAGAAGGAGAAAAAGGGAGAGAGGAGAGAAGACAAGTTCAACGTGCAGCAACACAACAACCTCCTCAGCAGCATCAGAAATGTCCACGCTGCGGTTCCATGAACACCAAGTTCTGCTATTTCAACAACTATAGCCTCTCGCAGCCTCGTCACTTCTGCAAAACGTGTAAAAGGTACTGGACACACGGTGGAACCTTCAGGAACATACCCGTTGGTGGCGGTTCCCGCAAAGTGAAGCGTGGCAAAACAAATTCTTCATCTTTTTCTTCTTCTTCTTCTTCATCTTCCAATTTGCTCACACAGCCACAGCAGAATCTGTTGATGAGGCCTTCACCACCCCTTATCACTACTATGGTTCAGTCTACTAGCCCTTACTATCATCTTGCTGGTGGAAGTGGGTATTTGTCTTCTCTTGCAACACTTCATTCTCTGAACAACAACACATCACAGCCTTTCAATCAGTACCTGAAAGTTGGTGGTGATTTTGCTGGTTCTTCTAATTCTCCTCTTGTGTCTGGCTTCAACGCTGCTTATTCGCTTCCACCGCGATTCCCCCAGCAACAATCTATGTATCCTGCACAACAACAACAACAACAGCAACAACGTTTGATTCCATCAAATATGGCTAGCAGCGGTGCTGTTTCTCATTCGGCTCTTCGCACGCAAAGCTTGATCAACAATGTTTCAACAAGTACAAACCATAGGGCTAGTATTTCTGATGCTTCTTTGTGGAGTGCTGCTACTGTCAACACCACTTCCATCGGTGGAAACTCTGATCAGAACAATGTCGTCAAAGGAGGTTCTTCTTCTTTGGTCCCAAGTCATTGGCTTCATCGCCCTGGGTTTGGTCCTCCTCAATAA 867 0.4579 MEQEGEKGREERRQVQRAATQQPPQQHQKCPRCGSMNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGGSRKVKRGKTNSSSFSSSSSSSSNLLTQPQQNLLMRPSPPLITTMVQSTSPYYHLAGGSGYLSSLATLHSLNNNTSQPFNQYLKVGGDFAGSSNSPLVSGFNAAYSLPPRFPQQQSMYPAQQQQQQQQRLIPSNMASSGAVSHSALRTQSLINNVSTSTNHRASISDASLWSAATVNTTSIGGNSDQNNVVKGGSSSLVPSHWLHRPGFGPPQ* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1685 288 MobiDBLite consensus disorder prediction 81 105 - -
Gso7g1685 288 MobiDBLite consensus disorder prediction 187 214 - -
Gso7g1685 288 MobiDBLite consensus disorder prediction 72 105 - -
Gso7g1685 288 MobiDBLite consensus disorder prediction 17 31 - -
Gso7g1685 288 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Gso7g1685 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 288 IPR045174 GO:0003700|GO:0006355
Gso7g1685 288 MobiDBLite consensus disorder prediction 1 16 - -
Gso7g1685 288 MobiDBLite consensus disorder prediction 256 288 - -
Gso7g1685 288 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 15 288 - -
Gso7g1685 288 MobiDBLite consensus disorder prediction 256 271 - -
Gso7g1685 288 MobiDBLite consensus disorder prediction 1 31 - -
Gso7g1685 288 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Gso7g1685 288 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1685 Gso-Chr7 38896599 38898072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g1685 22 105 C2C2-Dof Transcription Factor Family AT5G60200 60.714 1.28e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso7g1685 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1685 - - gmx:100814555 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1685 7 38896599 38898072 Gso15g0653 15 5817495 5819795 PCT
Gso7g1685 7 38896599 38898072 Gso11g2642 11 42395233 42397587 PCT
Gso15g0653 15 5817495 5819795 Gso7g1685 7 38896599 38898072 PCT
Gso11g2642 11 42395233 42397587 Gso7g1685 7 38896599 38898072 PCT