Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0479 ATGGAGGGGATGGCTCCCAATTCATGTGCAAGGCCAGTTCTAGAGAAAAAAACAAGGCCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCAGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCTCTGTGACAGCTTCATCATCATCATCACCAAAGGTTCCAGACCTAAACCCACCAATTAACCTCTCATCAGTCTCAGCTATCTCCTCACAAAACCCTAAAATAATGCATGGTGGCCAAGATCTCAACCTGGCTTTCCCAGCTATGGAAAAGTACCATCATGGCATGCCACCTTATGTTGAGATGCAAAACAGTGACACCACCACCACTCATCATCATCACCAAACCTCTTCTTCTTGTTCTGCTCCTCCAGCTTCTCTTTCAGCTCTTGAGCTACTTAGGTCAAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTTCTTCTTCCTTGATGCCAAACTCAACAAACAGCAATGCCCTTTACTCATCAGGGTTTCCCATGCAAGAAGTTAAACCTAGTCTTAACTTTTCTTCAGCTGATGGGATGGGAAATAGATCATATGATCATCATCAGATTCAAGAGAGGGGTGGTGGCAGACTTTTGTTCCCTTTTGGAGATGTCAAGCAGCTTTCTGCTGCTGCAGGTGCTGATCAAGTGGAACACAATAAAGAACAACAAGGGAATTCAACTGGTTATTGGACTGGAATGATTGGTGAAGGAACGTGGTAA 846 0.4444 MEGMAPNSCARPVLEKKTRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVSVTASSSSSPKVPDLNPPINLSSVSAISSQNPKIMHGGQDLNLAFPAMEKYHHGMPPYVEMQNSDTTTTHHHHQTSSSCSAPPASLSALELLRSSMASRGLNPYAPSSSLMPNSTNSNALYSSGFPMQEVKPSLNFSSADGMGNRSYDHHQIQERGGGRLLFPFGDVKQLSAAAGADQVEHNKEQQGNSTGYWTGMIGEGTW* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0479 281 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Gso7g0479 281 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 7 276 - -
Gso7g0479 281 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 276 IPR045174 GO:0003700|GO:0006355
Gso7g0479 281 MobiDBLite consensus disorder prediction 262 281 - -
Gso7g0479 281 MobiDBLite consensus disorder prediction 77 96 - -
Gso7g0479 281 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Gso7g0479 281 MobiDBLite consensus disorder prediction 65 96 - -
Gso7g0479 281 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Gso7g0479 281 MobiDBLite consensus disorder prediction 141 162 - -
Gso7g0479 281 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0479 Gso-Chr7 4749889 4752011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0479 16 281 C2C2-Dof Transcription Factor Family AT3G61850 48.772 7.96e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso7g0479 zf-Dof 3.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0479 - - gmx:778110 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0479 7 4749889 4752011 Gso7g0479 7 4749889 4752011 ECH
Gso7g0479 7 4749889 4752011 Gso16g0186 16 2117185 2119511 GST
Gso19g2167 19 50142971 50145051 Gso7g0479 7 4749889 4752011 PCT
Gso3g2207 3 47240860 47242950 Gso7g0479 7 4749889 4752011 PCT
Gso7g0479 7 4749889 4752011 Gso19g2167 19 50142971 50145051 PCT
Gso7g0479 7 4749889 4752011 Gso3g2207 3 47240860 47242950 PCT