Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2588 ATGTCACCTCCACCATTTTCCCCCCCTCTCTCTATTTCCCTTCTCTTTGTCTTCCTGTTAGCACCATTACTCTTAGCTCAATCTCCACCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTGTTGCCTGCAAAGGCACACTATATCCAAAACTCTGCCGTTCCATTCTCTCAGCCATTCGTTCATCCCCTTCAGACCCTTATGGCTATGGCAAGTTCTCCATAAAACAAAGCCTCAAACAGGCAAGAAAACTAGCCAAAGTCTTTGAGGACTTTCTCCAACGCCACCAAAAATCACCTTCCCTCAACCATGCTGAGACTGCATCACTTGGTGACTGCAGAGACCTAAACCAGCTCAATGTGGACTACTTGGCGTCCATATCCGAGGAGCTCAAATCCGCAAGCTCCTCAGACTCCGAACTCATCGAGAAAATCGAGAGCTACCTCAGTGCCGTGGCCACCAACCACTACACTTGCTATGATGGGTTGGTTGTGACCAAAAGCAACATTGCCAATGCACTTGCCGTGCCACTCAAGGATGTGACACAGTTGTATAGTGTGTCACTTGGGTTGGTCACTGAGGCTCTTGACAAAAACCTAAGGAGGAATAAGACCCGCAAGCATGGTCTCCCCACCAAGACCTTCAAGGTTAGGCAACCACTAGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGTTGCGCCAAATTATCCAATTGTACTAGTAGAACTGAAAGGATTCTTAAAGAAAGTGGAAGTCAAGGAATTTTATTGTACGACTTTGTGATTGTGAGCCATTATGGAATAGACAACTACACTTCCATTGGAGATGCTATTGCTGCTGCACCCAATAATACAAAGCCTGAAGATGGATATTTCCTTGTGTATGTTAGGGAGGGACTCTATGAGGAATATGTAGTTATTCCCAAAGAAAAGAAGAATATATTGCTAGTTGGAGATGGTATTAACAAGACTATCATCACAGGGAACCATAGTGTCATAGATGGTTGGACTACTTTCAATTCTTCCACCTTTGCTGTTTCTGGAGAAAGATTTATAGCAGTGGATGTTACATTCAGAAACACAGCTGGACCCGAAAAGCACCAAGCAGTGGCAGTGAGGAACAATGCTGATCTCTCCACATTCTACCGTTGCAGTTTTGAAGGATATCAAGACACACTCTATGTTCACTCCTTGAGGCAATTCTATAGGGAATGTGAAATCTATGGAACTGTGGACTTCATTTTCGGCAATGCAGCTGTGGTCTTCCAGGGTTGCAAAATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTCACAGCACAAGGAAGAACTGATCCAAATCAAAACACTGGCATTTCGATCCAAAACTGCAGCATTGATGCTGCACCGGACTTGGTCGCGGACTTGAATTCCACGATGAGTTTCTTAGGCCGTCCATGGAAGGTGTATTCGAGGACTGTCTATCTGCAGTCATACATTGGAAATGTAATTCAACCTGCTGGGTGGCTAGAGTGGAATGGAACAGTTGGATTAGACACTCTCTTTTATGGTGAATTCAACAACTATGGACCTGGTTCTAACACTAGCAATAGAGTAACATGGCCTGGTTACTCTCTGTTGAATGCTACTCAAGCTTGGAACTTCACAGTCCTTAATTTTACATTGGGAAATACTTGGCTTCCTGACACAGATATACCTTACACTGAAGGACTACTAAGATAG 1731 0.4408 MSPPPFSPPLSISLLFVFLLAPLLLAQSPPSPSPSSSSSSSVACKGTLYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQARKLAKVFEDFLQRHQKSPSLNHAETASLGDCRDLNQLNVDYLASISEELKSASSSDSELIEKIESYLSAVATNHYTCYDGLVVTKSNIANALAVPLKDVTQLYSVSLGLVTEALDKNLRRNKTRKHGLPTKTFKVRQPLEKLIKLLRTKYSCAKLSNCTSRTERILKESGSQGILLYDFVIVSHYGIDNYTSIGDAIAAAPNNTKPEDGYFLVYVREGLYEEYVVIPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECEIYGTVDFIFGNAAVVFQGCKIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCSIDAAPDLVADLNSTMSFLGRPWKVYSRTVYLQSYIGNVIQPAGWLEWNGTVGLDTLFYGEFNNYGPGSNTSNRVTWPGYSLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2588 576 PANTHER PECTINESTERASE 12 574 - -
Gso6g2588 576 CDD PMEI-like_3 43 194 - -
Gso6g2588 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 193 IPR035513 -
Gso6g2588 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 194 IPR035513 -
Gso6g2588 576 Pfam Pectinesterase 262 559 IPR000070 GO:0030599|GO:0042545
Gso6g2588 576 Gene3D - 260 576 IPR012334 -
Gso6g2588 576 PANTHER PECTINESTERASE 12 574 - -
Gso6g2588 576 Pfam Plant invertase/pectin methylesterase inhibitor 43 190 IPR006501 GO:0004857
Gso6g2588 576 SMART PMEI_2 35 191 IPR006501 GO:0004857
Gso6g2588 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 193 IPR006501 GO:0004857
Gso6g2588 576 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Gso6g2588 576 SUPERFAMILY Pectin lyase-like 262 573 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2588 Gso-Chr6 47656786 47662168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2588 3 575 Carbohydrate Esterase AT3G10720 60.172 0.0 709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2588 6 47656786 47662168 Gso11g2200 11 37648377 37653904 PCT
Gso11g2200 11 37648377 37653904 Gso6g2588 6 47656786 47662168 PCT