Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2587 ATGTCTTCCTTAAAATCCTACGGGAAAGTTGATGAGCATGAGCAAATGGTGCTGGAGGCAAGGAGGAAAACCAGAAAGAGAATCACAATCATAGGCCTCTCCTCAATAGTCCTAGCAGGTGTTATATTTGCTGCTATATTTGGCATTGTAAGCACCACTCATGACAACTCACAAGATGCCAATGATGCTCACACTGTGACAAGTTCACTGAGGGCTGTTTGTGATGTGACCTTGTACAAGGACTCATGCTATAGCAGCCTTGGTTCTGTTGTGGACTCAAGGCAGGTTCAGCCTGAGGAGCTGTTCATCTTGTCAATGAAGTTGGCCTTATCTGAAGTGTCCAAAGCTGTTGAGTATTTCAGTGATCATCATCTTGATGGGGTTTTCAAAGGGTTGAAGTTGATGGATGGAAGGACTAAGGAGGGTTTGAAAAATTGCAAGGAGCTTTTGGGTCTTGCGGTTGACCATCTGAATAGCTCTTTGACATCAGGGGAAAAGTCTTCAGTTCTTGATGTTTTTGAGGATCTTAAAACATGGTTAAGTGCTGCAGGTACATATCAGCAGACTTGCATTGAAGGCTTTGAAGATGCAAAAGAAGCAATTAAGTCTAGTGTAGTAAGCTATCTTAGAAATTCTACACAGTTCACTAGTAACAGTCTTGCCATCATAACCTGGATCAGCAAGGCTGCAACCACGCTGAACTTGAGGCGCTTACTGAGTTTACCTCATCAGAATGAGGCACCAGAATGGCTTCATTCAAAAGATAGGAAGCTGCTTCTAACAGAGGATTTGAGGGAAAAAGCTCACATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAAAAAAATTTCTGATGCACTTAAACATGTCCCTAATAATAGTAACAAGAGGACTGTGATCTATGTGAAGAGAGGGGTTTACTATGAAAATGTGAGGGTAGAGAAGACCAAATGGAATGTGATGATCATTGGTGATGGTATGACTTCTACTATTGTATCTGGCAGCCGTAACTTTGTGGATGGAACACCAACATTTTCAACAGCAACATTTGCTGTATTTGGAAGGAATTTCATAGCTAGAGATATGGGTTTTCGCAACACAGCTGGTCCACAGAAGCATCAAGCAGTGGCACTAATGACTAGTGCAGATCAAGCAGTTTACTATAGATGTCACATTGATGCATATCAGGACACTCTCTATGCTCATTCCAACCGCCAATTTTACAGAGAATGCAACATCTATGGCACTGTTGATTTCATTTTCGGCAATTCTGCGGTTGTGATCCAAAACTGCAACATTAGGCCAAAGCTACCTATGCATGGCCAGCAGAACACAATCACAGCTCAGGGAAAAACTGACCCTAACATGAACACTGGAATCTCCATTCAACATTGCAACATTTCACCCTTTGGAAACTTGAGTTCTGTCCAGACATACCTTGGAAGACCCTGGAAGAACTACTCAACCACAGTGTACATGAGATCAAGGATGGATGGCTTTGTGAGCCCCAAAGGCTGGTTGCCGTGGACCGGGAACTCAGCACCAGACACCATTTTCTATGCTGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTGAAGTGGAAGGGTTTGAGAACCATTACTAGTAAACAAGCCAGCAAGTTTACTATTAAGGCTTTTCTACAAGGAGATAAATGGATTTCTGCATCAGGTGCTCCATTTAAGTCTGATCTATGA 1728 0.4253 MSSLKSYGKVDEHEQMVLEARRKTRKRITIIGLSSIVLAGVIFAAIFGIVSTTHDNSQDANDAHTVTSSLRAVCDVTLYKDSCYSSLGSVVDSRQVQPEELFILSMKLALSEVSKAVEYFSDHHLDGVFKGLKLMDGRTKEGLKNCKELLGLAVDHLNSSLTSGEKSSVLDVFEDLKTWLSAAGTYQQTCIEGFEDAKEAIKSSVVSYLRNSTQFTSNSLAIITWISKAATTLNLRRLLSLPHQNEAPEWLHSKDRKLLLTEDLREKAHIVVAKDGSGKYKKISDALKHVPNNSNKRTVIYVKRGVYYENVRVEKTKWNVMIIGDGMTSTIVSGSRNFVDGTPTFSTATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYRCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQNTITAQGKTDPNMNTGISIQHCNISPFGNLSSVQTYLGRPWKNYSTTVYMRSRMDGFVSPKGWLPWTGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLRTITSKQASKFTIKAFLQGDKWISASGAPFKSDL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2587 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 228 IPR035513 -
Gso6g2587 575 Pfam Pectinesterase 269 561 IPR000070 GO:0030599|GO:0042545
Gso6g2587 575 SMART PMEI_2 65 222 IPR006501 GO:0004857
Gso6g2587 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 227 IPR035513 -
Gso6g2587 575 SUPERFAMILY Pectin lyase-like 267 572 IPR011050 -
Gso6g2587 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 226 IPR006501 GO:0004857
Gso6g2587 575 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Gso6g2587 575 Gene3D - 265 575 IPR012334 -
Gso6g2587 575 PANTHER PECTINESTERASE 5 573 - -
Gso6g2587 575 CDD PMEI-like_3 72 228 - -
Gso6g2587 575 Pfam Plant invertase/pectin methylesterase inhibitor 69 222 IPR006501 GO:0004857
Gso6g2587 575 PANTHER PECTINESTERASE 5 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2587 Gso-Chr6 47653214 47656564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2587 7 575 Carbohydrate Esterase AT3G10710 55.846 0.0 671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2587 6 47653214 47656564 Gso15g1886 15 41060117 41063390 PCT
Gso6g2587 6 47653214 47656564 Gso11g2201 11 37655219 37658978 PCT
Gso15g1886 15 41060117 41063390 Gso6g2587 6 47653214 47656564 PCT
Gso11g2201 11 37655219 37658978 Gso6g2587 6 47653214 47656564 PCT