LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g2580	ATGACAGAAGAGACTAATATTGGAGAACCACTTTTAAAGAAACAGTACTATGAGAACTGCCCTGGTTGCAAGGTTGATAGAGCCAAGGAGCTGGAAAAGGATGTCTCCATTCGAAATCTCGTCCATATATGGATTGTGGTGTTGTGCGGTGCTCTTCCTGTTTCTTCTCTCTATCCTTTCCTTTATTTCATGGTGAAGGATTTTAATATTGCAGAAGGGGAGGAAGATATCAGTGCCTATGCTGGCTATATTGGGTCTGCATTCATGCTTGGTAGATGTTTGACATCTATGTTGTGGGGAATGATAGCTGATCGCTATGGTAGAAAACCTGTTGTGATTATAAGTGTTATTTCTGTTGTCATTTTCAACATACTATTCGGCCTTAGTACAAGTTTTTGGATGGCTGTTATTACAAGACTTTTTCTTGGATGTTTAAATGGTGTGATGGGCACAATCAAGGCTTTTTCTTCTGAAATATTTCGAGAAGAATATCAACCTCTGGGACTCTCAACCGTCTCTGCTGCTTGGGGAGTAGGTTTAGCACTTGGCCCAGCATTGGGAGGTTATTTGGCTCAGCCAGTAGAAAAATACCCATATTTATTTTCAAAGGGTTCCTTTTGGGATAGGTTTCCCTACTTCTTGCCCTGCTTGGTTATATCAACTTTTGCATTTTCCGTAGCAATTGCTTGCATTTGGCTTCCGGAGACAAATCATAACCACAATCCTGAAGCTTTAGAAATCAGAAGTAGGGCCCCCGACAAAGACAAGGTGGTCCAAAACAATGAAAGTGTCTTCCGAAATTGGCCTTTAATGTCATCTATCATTGTTTATTGTGTTTTTTCACTTCATGACAATGCTTATTCTGAGGTTTTCTCATTATGGGCTGTCAGTCCTCGATGGTTGGGAGGTTTAAACTTTACAACCAACAGTGTTGGTAATGTTTTAGTAGTTTCAGGTTTTGCTATTATAATCTTCCAACTTGGACTATACCAATCAATACAAAAAACTTGTGGGCCTGTTAGCCTTGCTCGTATCTCAGGGGTGTTATCTATACCCATCTTGCAAAGCTACCCCTTCATGACAATGTTGTCTGGCTTCACACTGTATGCAGCGATATATATTGCTTCCATTCTAAACAATGTGATTATTGAGATAATTACAACTTGTTTATTAATTTTACAAAATAGAGCAGTGGAACAACAACAAAGGGGAATAGCTAATGGCATTTCTATGACTGCTATGTCAGCATTCAAAGTTATTGGTCCAGCTGCAGGTGGTGCAATATTAACATCTTCCCAAAAGCGGTTAAATGCTACATTCCTCCCAGGAACACATTTGATCTTCTTTTCTCTCAATGTTGTTGAAGGACTTGGAGTGTTGTTGACATTCAAACCATTCCTAACAATAAAGAAACTGCCCTTAGAGCTATTAAAATGA	1437	0.3932	MTEETNIGEPLLKKQYYENCPGCKVDRAKELEKDVSIRNLVHIWIVVLCGALPVSSLYPFLYFMVKDFNIAEGEEDISAYAGYIGSAFMLGRCLTSMLWGMIADRYGRKPVVIISVISVVIFNILFGLSTSFWMAVITRLFLGCLNGVMGTIKAFSSEIFREEYQPLGLSTVSAAWGVGLALGPALGGYLAQPVEKYPYLFSKGSFWDRFPYFLPCLVISTFAFSVAIACIWLPETNHNHNPEALEIRSRAPDKDKVVQNNESVFRNWPLMSSIIVYCVFSLHDNAYSEVFSLWAVSPRWLGGLNFTTNSVGNVLVVSGFAIIIFQLGLYQSIQKTCGPVSLARISGVLSIPILQSYPFMTMLSGFTLYAAIYIASILNNVIIEIITTCLLILQNRAVEQQQRGIANGISMTAMSAFKVIGPAAGGAILTSSQKRLNATFLPGTHLIFFSLNVVEGLGVLLTFKPFLTIKKLPLELLK*	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g2580	478	CDD	MFS_SLC46_TetA_like	43	429	-	-
	Gso6g2580	478	PANTHER	MAJOR FACILITATOR SUPERFAMILY-RELATED	5	477	-	-
	Gso6g2580	478	PRINTS	Tetracycline resistance protein signature	112	136	IPR001958	GO:0022857
	Gso6g2580	478	PRINTS	Tetracycline resistance protein signature	169	191	IPR001958	GO:0022857
	Gso6g2580	478	PRINTS	Tetracycline resistance protein signature	335	355	IPR001958	GO:0022857
	Gso6g2580	478	SUPERFAMILY	MFS general substrate transporter	38	473	IPR036259	-
	Gso6g2580	478	Pfam	Major Facilitator Superfamily	43	422	IPR011701	GO:0022857\|GO:0055085
	Gso6g2580	478	PANTHER	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10	5	477	-	-
	Gso6g2580	478	Gene3D	MFS general substrate transporter like domains	35	454	IPR036259	-
	Gso6g2580	478	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	39	470	IPR020846	GO:0022857

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g2580	Gso-Chr6	47559708	47571078	Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g1031	4	15422361	15446879	Gso6g2580	6	47559708	47571078	GST
	Gso6g2580	6	47559708	47571078	Gso11g2204	11	37672099	37678724	PCT
	Gso11g2204	11	37672099	37678724	Gso6g2580	6	47559708	47571078	PCT