Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2575 ATGAGTCAAATGACAAATGAGGTCGACAACAATGTGCATTATGATGATCAGACTGGGTCACAGTTAAATGATGATGGTAATGGAGTAGGTGTTGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGCTCTTCTGGTGAACTATGTCCAGAAGCATGGAGAGGGGAACTGGAATGTTGTTCAGAATTACTCAGGCCTGTCTCGTTGCGGAAAAAGCTGTAGACTGCGATGGGCCAATCACCTAAGGCCAAATTTAAAGAAAGGAGCATTTACCGCAGAAGAGGAGCGGATGATTGCTGAACTCCACGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCGCACTTGCCTGGTCGTACAGATAATGAAATAAAAAATTACTGGAACACCCGGATGAAGAGGCGGCGACGGGCTGGCTTGCCACTTTATCCTCCTGAAGTACTTTTGCAAGCATTTCAAGAGAGAAAGCATGGCCAAGGTACTGGTGAAATTAGCGATGGTGATGGAGGGCATCGTGATTTCTTGAAGAAAAACAATTACGAGATACATGATGCAATATTTGACAGTCTGAAGGAAAATCAAGGAATCTTACCTTTTTTGCCTGACCTTCCTGCTATTTCTGCTAATAGCTTTCTTCCAAATGGTCTTGGTTCTCCTCCATATTGTAATTTATTGCCATCAACATTGCCAAACCATGATCATCTTCAAGAGTCAACAATGTCTTTTATTGGTTCCAGTGAATTGAACAGCAATCGATTTTATCCATTTGACCATATTAAGGATAATACTTCTGATAAGATTTCAGAATCATTTGGATTGTATTCTCCCCTTGATCGTGGTGTCTCACATGGTTCAATTTGTTACAGCCATTCACTATCGAATGGCAATTCCTCTACTTCTAAGCCGACTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAAATTCCAGAAACCGAATTCGGTAGTTGGGGTACCTCTCCCCCACCTCCATTGAACGAGTCTCTTGATGTTTTCATTCATTCTCCTCAACCACCTAATGCACTAGACTCGGGTTCTTCTTCACCACTTAATAGTGGCTTGCTTGATGCATTACTTTATCAAGCAAACACTCTTGGTTGTTCAAAGAATAATTCTTCTGACAAGAGTTCAAATTCTTCAATTGCAACTCCTGGCGACAGAGCTGAGTGTTCTGCTTTGAACATGTACGAGACAGAATGGGAGGATTATGCTGACCCTTTATCTCCCTTTGGAGCAACTTCAATCCTGAATGAGCATCCTGTTGTTAGCACCAATGGAAACTCATGGGATGAATGGGAACTTTTTCAGACCTTTAGTGACAACAATGAGAGATTGCAGTCAATTGACCAAGTTTGGACCCCTAAGAGTGAAAATCAATCCATGTCTCTGTTGAATTTCACTCTGCCAGATGTCTTGATAACTTCAGATTGGCACGAGCTGTATTCTGACCACGACAGCACGAACCAAGCCATCATGACTGAAGCTAGTGATGATATCAGTGGACAGTAA 1533 0.4279 MSQMTNEVDNNVHYDDQTGSQLNDDGNGVGVVLKKGPWTAAEDALLVNYVQKHGEGNWNVVQNYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEERMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRRRAGLPLYPPEVLLQAFQERKHGQGTGEISDGDGGHRDFLKKNNYEIHDAIFDSLKENQGILPFLPDLPAISANSFLPNGLGSPPYCNLLPSTLPNHDHLQESTMSFIGSSELNSNRFYPFDHIKDNTSDKISESFGLYSPLDRGVSHGSICYSHSLSNGNSSTSKPTSEAVKSELPSLQIPETEFGSWGTSPPPPLNESLDVFIHSPQPPNALDSGSSSPLNSGLLDALLYQANTLGCSKNNSSDKSSNSSIATPGDRAECSALNMYETEWEDYADPLSPFGATSILNEHPVVSTNGNSWDEWELFQTFSDNNERLQSIDQVWTPKSENQSMSLLNFTLPDVLITSDWHELYSDHDSTNQAIMTEASDDISGQ* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2575 510 MobiDBLite consensus disorder prediction 1 25 - -
Gso6g2575 510 MobiDBLite consensus disorder prediction 319 356 - -
Gso6g2575 510 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 503 - -
Gso6g2575 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Gso6g2575 510 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Gso6g2575 510 MobiDBLite consensus disorder prediction 1 28 - -
Gso6g2575 510 MobiDBLite consensus disorder prediction 293 311 - -
Gso6g2575 510 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Gso6g2575 510 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Gso6g2575 510 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Gso6g2575 510 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 503 - -
Gso6g2575 510 ProSiteProfiles Myb-like domain profile. 33 82 IPR001005 -
Gso6g2575 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Gso6g2575 510 Gene3D - 34 87 - -
Gso6g2575 510 MobiDBLite consensus disorder prediction 293 312 - -
Gso6g2575 510 Gene3D - 90 136 - -
Gso6g2575 510 SMART sant 87 135 IPR001005 -
Gso6g2575 510 SMART sant 34 84 IPR001005 -
Gso6g2575 510 CDD SANT 37 82 IPR001005 -
Gso6g2575 510 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2575 Gso-Chr6 47513920 47519136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2575 28 507 MYB Transcription Factor Family AT3G11440 39.960 9.53e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g2575 Myb_DNA-binding 1.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1037 4 15802878 15808073 Gso6g2575 6 47513920 47519136 GST
Gso6g2575 6 47513920 47519136 Gso15g1898 15 41633537 41638651 PCT
Gso6g2575 6 47513920 47519136 Gso11g2213 11 37793088 37798465 PCT
Gso15g1898 15 41633537 41638651 Gso6g2575 6 47513920 47519136 PCT
Gso11g2213 11 37793088 37798465 Gso6g2575 6 47513920 47519136 PCT