Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2573 ATGTCTCATCTACGCACACAAGTTAAACAAGAAAAACAACTCATGAACATCCAGGAAGCACATGAAACGATTGCACAACCTGTGTGCTCTGTGTGCAACAACACAAGACCAAAATTTGAATGCAACAAAAAGAGAGACTTCACCTATGCTGAGCTGTATGCATCCACACAAGGCTTTTCCCCAAAGAATTTTCTGTCTGAAGGGGGGTTTGGTTCTGTCTACAAAGGGACGTTGTATGGACAGAAGGTTGCTGTTAAGCTACTTAAACTTATGTGTGCAAACCACAAAGGAGAGAAGGAATTCAAGTCTGAAGTTGATGCACTCAGCAAAGCAAGGCATGAGAATGTGGTCAAACTGTTAGGATCATGCACCGAAGGGAATCATAGACTTCTTGTCTATGAATATGTCTGCAATGGTTCATTGGACCAACACTTATCACAACATTCTCGTAAACCTCTTAGCTGGAAGGACAGGGTGAAAGTAGCTATTGGAGCCGCCGAAGGATTGCTATACCTGCATGAGAACAACATCATACATAGAGACATGACACCAAACAACATTCTTCTTACACATGATTATGATGTATTGCTAGGGGATTTTGGTTTGGCTAGAACCGTACTCGAAGATTCCTCATACTCCACTGACTGTGTTGGGAATCTGACTTATATGGCACCAGAATATGCAGAATTTGGTAAAGTGTCAACTAAGACAGATGTGTATTCCTTTGGGGTGGTTCTGCTACAGCTAATAACTGGAATGAGGACCACAGACAAACGAGTTGGAGATAAAGGTCTAGTGGGATGGGCTAGACCACTACTAAAAGACTGGAAATGCCAATCACTTATTGATGGAAGGATGATAAACTCTCATGACTGCCATCAACTCTATTGGATGAGCCGTCTTGTTGGAAATTGTCTCCAGAGAGATCCTCAAAAGAGATTGAATATGAATACAGTGGTCAGAGCTTTAAATCAGATAGGCCAAGGTTGTAGCTGCATTGTGCGGATAGACCATACGCTTGCCGAGTCAAGCCATTCTATTCCAAAAGATGATATACGGAGCTCTTAA 1068 0.4213 MSHLRTQVKQEKQLMNIQEAHETIAQPVCSVCNNTRPKFECNKKRDFTYAELYASTQGFSPKNFLSEGGFGSVYKGTLYGQKVAVKLLKLMCANHKGEKEFKSEVDALSKARHENVVKLLGSCTEGNHRLLVYEYVCNGSLDQHLSQHSRKPLSWKDRVKVAIGAAEGLLYLHENNIIHRDMTPNNILLTHDYDVLLGDFGLARTVLEDSSYSTDCVGNLTYMAPEYAEFGKVSTKTDVYSFGVVLLQLITGMRTTDKRVGDKGLVGWARPLLKDWKCQSLIDGRMINSHDCHQLYWMSRLVGNCLQRDPQKRLNMNTVVRALNQIGQGCSCIVRIDHTLAESSHSIPKDDIRSS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2573 355 PIRSF ILK 4 338 - -
Gso6g2573 355 ProSitePatterns Tyrosine protein kinases specific active-site signature. 177 189 IPR008266 GO:0004672|GO:0006468
Gso6g2573 355 Gene3D Phosphorylase Kinase; domain 1 29 135 - -
Gso6g2573 355 Gene3D Transferase(Phosphotransferase) domain 1 136 335 - -
Gso6g2573 355 PANTHER TYROSINE KINASE FAMILY PROTEIN 5 354 - -
Gso6g2573 355 ProSiteProfiles Protein kinase domain profile. 59 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2573 355 PANTHER OS01G0253100 PROTEIN 5 354 IPR045271 GO:0004714|GO:0006468
Gso6g2573 355 Pfam Protein tyrosine and serine/threonine kinase 63 323 IPR001245 GO:0004672|GO:0006468
Gso6g2573 355 SUPERFAMILY Protein kinase-like (PK-like) 40 323 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2573 Gso-Chr6 47493112 47496607 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2573 41 326 Trihelix Transcription Factor Family AT5G38560 44.816 5.44e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gso6g2573 PK_Tyr_Ser-Thr 6.1e-54 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2573 6 47493112 47496607 Gso11g2214 11 37799156 37804789 PCT
Gso11g2214 11 37799156 37804789 Gso6g2573 6 47493112 47496607 PCT