Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1910 ATGATGATGGTGCGGTTCGTCTATGCTCTTATCTTTGGGTTTGTGGCTTTGAATTGCTTGCAAGTGTTTGAAGAATCCAATGCTCAACGCTTACCGCAAGATGAAGTGAAAGCACTGCAAGCAATATCGGATAAACTAGAGAACGTGAATTGGAATGTCACAGAACGTTCCTGCATAGAGGTTGGAGGCTTCAATGGCACAATTAATAAAAACAACGGTGACATCGTAAGGAATGTCACATGCAATTGCACTTTCCAAAATAACTCAGTTTGCCATGTTGATAAGATCATTCTCAAGGATCAAAATATATCAGGAGTTCTCCCCAGTGAATTTGGAAATCTCACACACCTGAAAGAACTTGATCTCACTCGCAACTATCTCAATGGCTCACTTCCAACAAATTTTCCTCCCAACTCTCTGGTCATTTTGTCCCTTCTGGGAAACCGACTAAGTGGTCCAATTCCCACAGAAATTGGTGATATTGCTAGTTTGGAGGAACTGGTCTTAGAATGTAATCAACTTAAAGGACTATTTCCTCCTAGTCTTGGAAATTTGAGCAAGTTGAAGAGACTGCTTCTTTCTGCAAATAATTTTACAGGGACCATACCAGAAACATATAGCAAACTAAAGAATCTCACTGAGTTTAGGATAGATGGAAGCAGTTTATCCGGACCAATACCCAGTTTCATTGGAAACTGGACCAATCTTGAAAGACTGGATTTGCAGGGAACAAATATGGAAGGCCCAATTCCACCCACTATATCTCAGTTGAAACTTTTGACTGAGTTGAGAATAACTGATTTGAATGGTGGACCAAGTATGACATTTCCTGATCTGAAGAATTTGAAAAAATTGAAACGACTGGTATTGAGAAATTGCTTAATCACGGGTTCTATTCCCGATTACATCGGAGAAATGGCAAACTTGACTACTTTAGACCTAAGCTTCAACATGTTGACTGGTCCAGTCCCAGATCCAATACAGGGATTGGATAACCTAGACTACTTGTTTCTGACAAATAATTCTCTGAGTGGACCAATTCAGGAATGGATACTGAGCTTCAAGAAGCATATAGATCTATCTTACAACAATTTTACAAGTTCTTCTGCCACTACCTGTCAGCCCTTGGATGTGAACTTGGCTTCAAGCCATTCTTCTTCAGCAGTAACTTCGGCCTCAACATTTTGTTTGAAGAGGAACCTTCCTTGTGCAGAAAAACCCCAATATAAGTCATTGTTCATAAACTGTGGAGGAAAAGAGGGGGAGTTTGAAGGCAATGACTACGTAGGTGACCTCGAGCTAGATGGAATTTCAAACTTTGATCTTAGAAATGAAGGACAATGGGCTTATAGCAGCACAGGAGTATATATGGGAAAGGCTGATGCTGGTTTTATAGCAACAAATACATTTTCTTTGAATATTACTGGTCCAGATTACTACCAAAATGCCCGCCTTTCCCCTCTGTCGCTTAACTACTATGGCCTTTGTCTGCCAAAGGGCAATTATAAAGTGAAGCTCCATTTTGCTGAGATTATGTTTTCTAATGACCAGACTTTTAGAAGTCTAGGAAGGCGCATATTTGATGTTTCAGTTCAAGGTTTTAGATATTTGAAAGATTTTAATATTATGGAAGAAGCTGGTGGAGTTGGAAAGAATATCACTAAGGAATTTGATGTTGATGTTGATGATGGAACCTTGGAAATCCACTTATACTGGGCAGGAAAAGGAACTACTGCCATTCCTGATAGAGGTGTATATGGACCTCTTATATCTGCTATTGAGATGATACCAAACTTTGAGAATCCTTCAAAAGGGATGTCTACTGGATTCATTGTTGGAATTGTTGCTGCATCTTGTGGGCTTGTCATATTGATACTGATTCTCCTCTGGAAGATGGGTTTCATTTGTAAGAAAGATACAACAGATAAAGAACTTCTAGAATTGAAAACGGGTTATTTCAGCTTAAGACAAATTAAAGCAGCTACTAATAACTTTGACCCTGCAAATAAGATAGGTGAAGGAGGATTTGGGCCTGTATACAAGGGTGTGTTGTCAGATGGTGATGTGATTGCTGTTAAGCAGCTCTCCTCAAAATCAAAGCAAGGGAACCGTGAATTTGTCAATGAAATTGGAATGATATCTGCTTTGCAGCATCCAAATCTGGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTACTTATATATGAATACATGGAGAACAACAGTCTTGCTCGTGCACTTTTCGGTGAACATGAACAGAAGCTGCACTTGTATTGGCCCACAAGAATGAAGATCTGTGTGGGGATAGCAAGGGGATTGGCTTATCTTCATGAGGAGTCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGACAAGGATCTGAATGCCAAGATCTCTGACTTTGGCTTAGCTAAGCTTGATGAAGAAGAGAATACTCATATCAGTACACGTATAGCCGGAACAATTGGTTACATGGCTCCAGAATATGCTATGCGGGGTTATTTGACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTGAGTGGAAAAAGCAACACAAAATACAGGCCAAAGGAGGAGTTTGTATATCTTCTAGATTGGGCATATGTTCTCCAAGAGCAAGGAAACCTTCTGGAATTGGTGGATCCAAGTCTTGGTTCAAAATACTCCCCAGAGGAGGCCATGAGAATGCTGAGCTTGGCACTCTTATGCACCAATCCATCTCCCACTCTTAGACCAACCATGTCATCTGTAGTGAGCATGCTTGAAGGAAAAATTCCAATCCAAGCGCCGATAATCAGGGGCAGTGAGAGCAACCAAGATGTAAGATTTAAAGCCTTTGAATTGCTATCACAAGACAGCCAAACTCTTGTTTCTTCCGCATACTCACAAGAAAGTATGAAGCAAAGACACAAATCAGAAGATGGACCGTGGGTTGACTCCTCCATATCTCTTCCAAGTGGTGATGATTATTCTTCAAGCAGTAAACTTATTTAA 3039 0.4018 MMMVRFVYALIFGFVALNCLQVFEESNAQRLPQDEVKALQAISDKLENVNWNVTERSCIEVGGFNGTINKNNGDIVRNVTCNCTFQNNSVCHVDKIILKDQNISGVLPSEFGNLTHLKELDLTRNYLNGSLPTNFPPNSLVILSLLGNRLSGPIPTEIGDIASLEELVLECNQLKGLFPPSLGNLSKLKRLLLSANNFTGTIPETYSKLKNLTEFRIDGSSLSGPIPSFIGNWTNLERLDLQGTNMEGPIPPTISQLKLLTELRITDLNGGPSMTFPDLKNLKKLKRLVLRNCLITGSIPDYIGEMANLTTLDLSFNMLTGPVPDPIQGLDNLDYLFLTNNSLSGPIQEWILSFKKHIDLSYNNFTSSSATTCQPLDVNLASSHSSSAVTSASTFCLKRNLPCAEKPQYKSLFINCGGKEGEFEGNDYVGDLELDGISNFDLRNEGQWAYSSTGVYMGKADAGFIATNTFSLNITGPDYYQNARLSPLSLNYYGLCLPKGNYKVKLHFAEIMFSNDQTFRSLGRRIFDVSVQGFRYLKDFNIMEEAGGVGKNITKEFDVDVDDGTLEIHLYWAGKGTTAIPDRGVYGPLISAIEMIPNFENPSKGMSTGFIVGIVAASCGLVILILILLWKMGFICKKDTTDKELLELKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVLSDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGEHEQKLHLYWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTKYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSPEEAMRMLSLALLCTNPSPTLRPTMSSVVSMLEGKIPIQAPIIRGSESNQDVRFKAFELLSQDSQTLVSSAYSQESMKQRHKSEDGPWVDSSISLPSGDDYSSSSKLI* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1910 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 997 - -
Gso6g1910 1012 Gene3D Transferase(Phosphotransferase) domain 1 741 945 - -
Gso6g1910 1012 SUPERFAMILY L domain-like 81 370 - -
Gso6g1910 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Gso6g1910 1012 PANTHER - 71 997 - -
Gso6g1910 1012 Pfam Protein tyrosine and serine/threonine kinase 669 935 IPR001245 GO:0004672|GO:0006468
Gso6g1910 1012 CDD STKc_IRAK 671 938 - -
Gso6g1910 1012 SMART serkin_6 665 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1910 1012 Gene3D Ribonuclease Inhibitor 269 396 IPR032675 -
Gso6g1910 1012 Gene3D Ribonuclease Inhibitor 35 203 IPR032675 -
Gso6g1910 1012 ProSiteProfiles Protein kinase domain profile. 665 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1910 1012 MobiDBLite consensus disorder prediction 974 1012 - -
Gso6g1910 1012 Gene3D Phosphorylase Kinase; domain 1 631 740 - -
Gso6g1910 1012 SUPERFAMILY Galactose-binding domain-like 446 577 IPR008979 -
Gso6g1910 1012 Pfam Leucine rich repeat 163 220 IPR001611 GO:0005515
Gso6g1910 1012 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Gso6g1910 1012 Gene3D Ribonuclease Inhibitor 204 268 IPR032675 -
Gso6g1910 1012 Pfam Malectin domain 411 593 IPR021720 -
Gso6g1910 1012 Gene3D - 411 598 - -
Gso6g1910 1012 SUPERFAMILY Protein kinase-like (PK-like) 647 937 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1910 Gso-Chr6 29857495 29872032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1910 19 1003 Receptor kinase-like Gene Family AT1G53440 60.944 0.0 1198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g1910 PK_Tyr_Ser-Thr 9.4e-50 CL0016