Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1639 ATGCAGGAGAATAAGGATCCAGCAATTAAGCTCTTCGGCCAGAAGATTGCCTTCGCCGGAGAAGTCGACCCTCCGGCCATTTCCGCCGGCGAAATTGACTCGCCGCCGGCGATGGATGTCGACAAGGACGAAGAAGACGACTTTGGTGACTCAGAGACTGAAGATGAGAAAGACAAGGATCCCCGAGCTGAAAAAGTTAGTGAGAAAACGAAAGAAGCTGATCCTCCTCCAAATGCTGCAGACTCAAAGAAGACCCCAGAGGGTATTCAGAACCCAAACACACCTTCCATAGACGAAGAATCTGCAAAGTCAAAAACCAACAAGTCAGAGAACAACAACAACAACAAAACACTGAAGAAGCCGGACAAAATTCTGCCATGTCCGCGCTGCAACAGCATGGACACAAAGTTCTGCTACTACAACAACTACAACGTCAACCAACCACGCTATTTCTGCAAGGCGTGCCAAAGGTACTGGACTGCGGGAGGAACCATGCGAAACGTGCCGGTGGGAGCGGGGAGAAGAAAGAACAAGAACTCGGCTTCGCACTACCGCCACATCACAATCTCTGAAGCACTTCAAGCAGCAAGAATTGATGCTGCCCCCAACGGGACTCATCATCTTTTGAAACCAAATGGGAGAGTCCTCAGCTTCGGATTAGAATTAGACCCTCCAATTTGTGATTCCATGGCCTCAGTCCTTAACCTCACTGCAGAGAAAAAGGGTACTCTTAACAACAATTCAAGAAACAACAACAACAACAACAACAACAACGGTGATGATTGCTCAAGTGCATCTTCAATTACTGTTTCCAATGAAGAAAACGGGAAAAGCACGTCTCAAGAATCAATTGTGGTGCCTAACAGCAACGGTTTCATCCACCATGTTCCATGCATTTCAACTCTTCCTTGGCCTTATCCTTTTCCCTCAGGAGCACCTGCTATGTGCCCTCCAGGGTTTCCAATGTCATTCTACCCTGCAGCATTTTGGAACATTCCATGGTTTCCCTCACAACACTCACACCATTCTTCTGCTCCAACTCCTAGGTCTCCGAATTCTCCGACACTAGGAAAACACTCCCGCGATGACGACGCGACAAAACAATACCATTTGCAAGAAGAACAACCACCCTCAAGGCAGAGAAACGGTTCTGTTTTGGTCCCCAAAACACTGAGAATTGATGACCCAAGTGAGGCTGCAAAGAGTTCTATATGGGCAACTTTGGGCATCAAGAATGAGTGTGTCACTGGTGGAGGCATGTTCAAGGGATTCCAATCAAAGAAAGAAGAGAAAGACCATGTTGTTGAAGCCTCTCCTGTGTTGAGAGCTAACCCTGCGGCTTTGTCTAGATCCCTTAACTTTCATGAGAACTCTTGA 1377 0.4735 MQENKDPAIKLFGQKIAFAGEVDPPAISAGEIDSPPAMDVDKDEEDDFGDSETEDEKDKDPRAEKVSEKTKEADPPPNAADSKKTPEGIQNPNTPSIDEESAKSKTNKSENNNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDAAPNGTHHLLKPNGRVLSFGLELDPPICDSMASVLNLTAEKKGTLNNNSRNNNNNNNNNGDDCSSASSITVSNEENGKSTSQESIVVPNSNGFIHHVPCISTLPWPYPFPSGAPAMCPPGFPMSFYPAAFWNIPWFPSQHSHHSSAPTPRSPNSPTLGKHSRDDDATKQYHLQEEQPPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVTGGGMFKGFQSKKEEKDHVVEASPVLRANPAALSRSLNFHENS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1639 458 MobiDBLite consensus disorder prediction 84 100 - -
Gso6g1639 458 MobiDBLite consensus disorder prediction 55 78 - -
Gso6g1639 458 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Gso6g1639 458 MobiDBLite consensus disorder prediction 242 283 - -
Gso6g1639 458 PANTHER CYCLIC DOF FACTOR 1 1 457 - -
Gso6g1639 458 MobiDBLite consensus disorder prediction 371 385 - -
Gso6g1639 458 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Gso6g1639 458 PANTHER CYCLIC DOF FACTOR 2 1 457 IPR045174 GO:0003700|GO:0006355
Gso6g1639 458 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Gso6g1639 458 MobiDBLite consensus disorder prediction 338 390 - -
Gso6g1639 458 MobiDBLite consensus disorder prediction 38 54 - -
Gso6g1639 458 MobiDBLite consensus disorder prediction 356 370 - -
Gso6g1639 458 MobiDBLite consensus disorder prediction 22 124 - -
Gso6g1639 458 MobiDBLite consensus disorder prediction 338 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1639 Gso-Chr6 17408533 17411743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1639 1 456 C2C2-Dof Transcription Factor Family AT3G47500 48.861 2.93e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso6g1639 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1639 - - gmx:100798021 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1639 6 17408533 17411743 Gso6g1639 6 17408533 17411743 ECH
Gso19g0206 19 2687206 2690578 Gso6g1639 6 17408533 17411743 ECH
Gso4g1413 4 41560369 41563605 Gso6g1639 6 17408533 17411743 GST