Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1530 ATGGGTCTATCTTCTTTGCACGTCTGCATGGATTCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGGATGGATTCTTCTTCTTCACCCTCTGGGGACATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCCCATGACCTTGCCCTAAAGTGCCCTAGGTGTGAGTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACCTGCAGAAGGTACTGGACCAAAGGTGGCACTCTTAGGAACATTCCTGTTGGTGGTGGCTGCAGAAAGAACAAAAAAGTCTCTGCCAAAAAATCCAATAATGACCACCAATTAGTTAACAACAACAATAGCCCAACACAGCCTCCACCCTCCTCCTCCTACCACCACCACAGCCACCCCAAAGACCTTCAACTTTCCTCCTTCCCAGATGTGCAATTTTCCCACCTCAGCAACTTGCTTGGGACCAATATTGCAAACCCTAGTTTCATGGAGGGCAAATATGGAATTGGCATGATTGAGAACCCTAGGCCTATTGACTTCATGATGGAGAGCAAGCTGGAGGGCATAATTGGGAGCGGTAGTAGTTCTAGGAATAATTTTGATTTTTTTGGAAATAGTGACATGTCTATGGGTATGACTAGTGTTGGGCTGGGAGATATGAATAGTACTCAAAATGGGTTGCCACCAAATTTTCATCATCATGGTCTTTCAGCATTTGGTGGCATGTCTATGTCTATGTCCCTTGATCATGGCAACAACAACAATAACAGTGGCGGCAATGGTGGTAGTAATAACTACTTAATGGACTCTTGCCAGCGTTTGATGCTGCCGTATGCCAGCAGCAATGAGGACCATAATGCCCCTATTGATGTGAAGCCAAACCCTAAACAGCTATTGTCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCGGGAAAAGACTCATTTGGGTATCTCAACGGCCCAGGATCATGGACTGGCATGATGAACGGCTATGGATCTTCCACCACAAACCCTTTGGTCTAA 1062 0.468 MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDLALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNNDHQLVNNNNSPTQPPPSSSYHHHSHPKDLQLSSFPDVQFSHLSNLLGTNIANPSFMEGKYGIGMIENPRPIDFMMESKLEGIIGSGSSSRNNFDFFGNSDMSMGMTSVGLGDMNSTQNGLPPNFHHHGLSAFGGMSMSMSLDHGNNNNNSGGNGGSNNYLMDSCQRLMLPYASSNEDHNAPIDVKPNPKQLLSLEWQDQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTNPLV* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1530 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 347 IPR045174 GO:0003700|GO:0006355
Gso6g1530 353 PANTHER - 12 347 - -
Gso6g1530 353 MobiDBLite consensus disorder prediction 102 146 - -
Gso6g1530 353 Pfam Dof domain, zinc finger 56 111 IPR003851 GO:0003677|GO:0006355
Gso6g1530 353 MobiDBLite consensus disorder prediction 118 139 - -
Gso6g1530 353 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Gso6g1530 353 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1530 Gso-Chr6 15667407 15669802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1530 1 353 C2C2-Dof Transcription Factor Family AT5G62940 42.543 1.16e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso6g1530 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1530 - - gmx:100806697 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1546 4 44746392 44748832 Gso6g1530 6 15667407 15669802 GST
Gso5g0317 5 3307498 3310053 Gso6g1530 6 15667407 15669802 PCT
Gso17g0753 17 6953726 6956634 Gso6g1530 6 15667407 15669802 PCT
Gso6g1530 6 15667407 15669802 Gso5g0317 5 3307498 3310053 PCT
Gso6g1530 6 15667407 15669802 Gso17g0753 17 6953726 6956634 PCT