Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1113 ATGGACACAGCTCAGTGGGCACAGGGTATTGGAGTGGTTAAACAACCTACTATGGAAGGAGGTTCAAAGCCTCCTCCTCCTCCTATGTTGGAGAGAAGGGCAAGGCCTCAAAAGGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACCAACACCAAATTCTGCTACTACAACAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTCAGAAACGTTCCTGTCGGTGGTGGCTCTAGAAAGAACAAAAGATCAACCCCATCAGCGCCACCACCATCATCAGCATCAGCACAAGCAAAGAAGCTTCCTGATCTCACAACACCTAATTTCCCTCAATCTGCTTCCCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACCTAGCATATCCACCAGCTGAAGACTACAACACTGTGTCCATGTCAAAGCTCATTGAGGTTCCTTACAACACTGAATTAGACAAGGGTGGCCTTCATCAAAACCCTACTTCCTCATCAACACCAACATCTGCATCTTCTCACCATCAGTTGTCTGCCATGGAGCTTCTCAAGACTGGGATTGCTGCTGCTTCCTCAAGGGGTTTGAACTCCTTCATGCCAATGTATAATTCAACTCATCATGGATTTCCCTTGCAAGACTTTAAGCCACCACATCATGGCCTTAACTTCAGTCTTGAGGGGTTTGATAATGGTACTTATGGGGGTCTTCATCAGGGAATTCAAGAGGATCCTACTACTGGTGGTGCACGGATCTTGTTTCCTACTGTGGAGGATTTGAAGCAGCAGGTTCCAAGCACAAATGAGTTTGATCATCAGCAGAATAGAAGTCAAGAGGGTTCAGCTCATGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 921 0.4658 MDTAQWAQGIGVVKQPTMEGGSKPPPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSAPPPSSASAQAKKLPDLTTPNFPQSASQDPKIHQGQDLNLAYPPAEDYNTVSMSKLIEVPYNTELDKGGLHQNPTSSSTPTSASSHHQLSAMELLKTGIAAASSRGLNSFMPMYNSTHHGFPLQDFKPPHHGLNFSLEGFDNGTYGGLHQGIQEDPTTGGARILFPTVEDLKQQVPSTNEFDHQQNRSQEGSAHGYWNGMLGGGSW* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1113 306 MobiDBLite consensus disorder prediction 80 133 - -
Gso6g1113 306 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Gso6g1113 306 Pfam Dof domain, zinc finger 39 96 IPR003851 GO:0003677|GO:0006355
Gso6g1113 306 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Gso6g1113 306 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 303 - -
Gso6g1113 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 303 IPR045174 GO:0003700|GO:0006355
Gso6g1113 306 MobiDBLite consensus disorder prediction 1 42 - -
Gso6g1113 306 MobiDBLite consensus disorder prediction 165 188 - -
Gso6g1113 306 MobiDBLite consensus disorder prediction 282 306 - -
Gso6g1113 306 MobiDBLite consensus disorder prediction 168 188 - -
Gso6g1113 306 MobiDBLite consensus disorder prediction 91 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1113 Gso-Chr6 10906173 10907945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1113 29 306 C2C2-Dof Transcription Factor Family AT3G61850 43.098 2.50e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso6g1113 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1113 - - gmx:778115 629.402